Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00098 ATGGGAACCCCAGAAGAAGGAGAAGAGCTTCTCAAGAAGATAGAACGGCTAGAAGCTGGTCACGCTCACCTCAAGCAGGAAATGTCCAACTTCATGCTCATCCAAGACAACAAGTCTCGTTCCAGGTTCGGTGCTGCCACGTGTAACAAACCCTCTTCTTCTTCTTCTCTGCATCAAAATGGAAACAAGTATCTCAATATCTTGCAGTCAATGGGCCATGCTGTTCATGTATTGGATCTTCAATGTCGCATCATGTACTGGAACCCTAGTGCTGAAAGTATGTATGGTTATGCAGCAGAAGAAGTTCTTGGGCAGGATGGGATTGAGATGCTTGTGGATCCCAGGGATTTTGGCTTAGCCAATGATGTGTTCAACCATGTCAAAATGGGAGAGAGTTGGAGGGGCCAGTTACCTGTTAAGAATAAGAAAGGGGATAGGTTCTATGCTGTGGCAACCAATACACCTTTTTATGATGATGATGGAAGCTTGGTTGGGGTTATTTGTGTCTCCTGTGATTCAAGGCCATTTCTTGAAACCAGAATTCCCTTTTCAGGGATAGAGAATGCAGAACCAGATTCCGGTTCCAATAGTCGTAGGAGTAGCATTTCGGATAAACTTGGCCTTGACTCTCAGCAGCCACTTCAAGTTACTCTTGCATCGAAAATTTCAAATTTGGCCTCGAAGGTGAGTAACAAAGTCAAGTCTAGAATCCGGACTGGAGAAAATAATGTCAATCGTGAAGGTGGAAGCGGAGAAAGTCAGCATTCCGAGCAGAGTTTCTCGGACTGTGTTCTTTCTGACCAGAGAGAGGATGGTAATTCCAGTGGAGCTAGCACACCCAGAGGAGAGGTGCTAAAATCTCCTTTTGGTGCATTTTCTCATGTTGAAGAGAAATCCCAAGGAAAAACTATGAGAGACTCAGGTGATCAGAGTGAAGGAAAACCTCTTCACAGGATCATAACTTCTAAGGCTGAAACATGGATTCAAAAGAAAACATCATCTTGGCCATGGAGAGCAAACGATCAGGAAGTATCTGAGGCAAGGAATGTTCGTGTTGCCTGGCCTTGGTTGCAGGGTGATCAAGAAAATGAGTCAATTAATCAGAAGAATATTTCTTCTGGATTGAAGCCAGAAAGCCAGGCAGGAGAAAGTAATCGATCTGCTAATAACGAGGCTTCTGGATCCTGGTCCTCGTTTGTTAATGTTAACAGCACAGGTAGTACCAGCAGCTGTGGGAGTGGCAGCAGTTGTGCTGCCCATAATAAAGGGGATGTTGACTCTGATTGCTTGGATTTTGAAATTTTGTGGGAGGACCTAACAATTGGAGAACCAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCTCAGTGGTATGGATCGGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAATACTCAGATGATGTGATACTGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGACTTCGTCATCCAAACATTATTCTCTTTATGGGGGCTGTGACTTCACCTCAACATCTATGCATCGTAACAGAGTTTCTCCCACGTGGAAGCTTGTTTCGTTTGCTTCAGAGAAACACATCCAAACTTGAGTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCCCCTATCATCCATCGAGATTTGAAGTCTTCAAATATTTTAGTTGATAGGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCGCGTCTTAAACATGAAACATATCTCACTACTAAGACAGGAAATGGCACGGTAGGCTCTCATTTGTTGTGGTCCCTTAGATGTTTGATTGTTTGA 1845 0.4374 MGTPEEGEELLKKIERLEAGHAHLKQEMSNFMLIQDNKSRSRFGAATCNKPSSSSSLHQNGNKYLNILQSMGHAVHVLDLQCRIMYWNPSAESMYGYAAEEVLGQDGIEMLVDPRDFGLANDVFNHVKMGESWRGQLPVKNKKGDRFYAVATNTPFYDDDGSLVGVICVSCDSRPFLETRIPFSGIENAEPDSGSNSRRSSISDKLGLDSQQPLQVTLASKISNLASKVSNKVKSRIRTGENNVNREGGSGESQHSEQSFSDCVLSDQREDGNSSGASTPRGEVLKSPFGAFSHVEEKSQGKTMRDSGDQSEGKPLHRIITSKAETWIQKKTSSWPWRANDQEVSEARNVRVAWPWLQGDQENESINQKNISSGLKPESQAGESNRSANNEASGSWSSFVNVNSTGSTSSCGSGSSCAAHNKGDVDSDCLDFEILWEDLTIGEPIGQGSCGTVYHAQWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKRLRHPNIILFMGAVTSPQHLCIVTEFLPRGSLFRLLQRNTSKLEWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNILVDRNWTVKVGDFGLSRLKHETYLTTKTGNGTVGSHLLWSLRCLIV 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00098 614 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 241 601 - -
Pumo2g00098 614 MobiDBLite consensus disorder prediction 185 208 - -
Pumo2g00098 614 SUPERFAMILY Protein kinase-like (PK-like) 430 600 IPR011009 -
Pumo2g00098 614 Pfam PAS fold 64 169 IPR013767 GO:0006355
Pumo2g00098 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 558 570 IPR008271 GO:0004672|GO:0006468
Pumo2g00098 614 MobiDBLite consensus disorder prediction 298 315 - -
Pumo2g00098 614 Coils Coil 7 27 - -
Pumo2g00098 614 MobiDBLite consensus disorder prediction 296 315 - -
Pumo2g00098 614 MobiDBLite consensus disorder prediction 361 394 - -
Pumo2g00098 614 SUPERFAMILY PYP-like sensor domain (PAS domain) 57 172 IPR035965 -
Pumo2g00098 614 MobiDBLite consensus disorder prediction 232 281 - -
Pumo2g00098 614 CDD STKc_MAP3K-like 445 601 - -
Pumo2g00098 614 Pfam Protein tyrosine and serine/threonine kinase 439 596 IPR001245 GO:0004672|GO:0006468
Pumo2g00098 614 Gene3D Phosphorylase Kinase; domain 1 432 516 - -
Pumo2g00098 614 MobiDBLite consensus disorder prediction 232 285 - -
Pumo2g00098 614 ProSiteProfiles Protein kinase domain profile. 439 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00098 614 FunFam PAS domain-containing protein tyrosine kinase 432 516 - -
Pumo2g00098 614 Gene3D Transferase(Phosphotransferase) domain 1 517 606 - -
Pumo2g00098 614 MobiDBLite consensus disorder prediction 189 208 - -
Pumo2g00098 614 NCBIfam PAS domain S-box protein 63 169 IPR000014 -
Pumo2g00098 614 Gene3D PAS domain 72 174 - -
Pumo2g00098 614 ProSiteProfiles PAS repeat profile. 60 131 IPR000014 -
Pumo2g00098 614 SMART serkin_6 439 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00098 614 CDD PAS 74 172 IPR000014 -
Pumo2g00098 614 SMART pas_2 62 129 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00098 Pumo-Chr2 2042619 2048367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00098 7 600 MAP Kinase Kinase Kinase AT3G06620 53.763 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Pumo2g00098 PK_Tyr_Ser-Thr 2.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00098 - - gmx:100815858 1066.99