Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00093 ATGGCTTCTCCTCCTTCGTGGTTATTGTCTTTTCATGCTTCATCATTATTCATAGTGGCAATCCTCATTTTTTGCATGTCACATTGTGCTCTTGGCCTTGATGCACAAACAGTCATAGACTCTCCTATGTTAACAGAAAAGTTAGGAATCAATCGCACCATCATAGTAGATATCAACGGCAATGGGGAGTTCAAATCTATCCAAGATGCCATAAATTCCATTCCTGAAGGAAATACTAATTGGGTTATCGTCCATGTTAGGAAAGGAGTATACAGAGAAAAGGTGCATATACCAGAGAACAAGCCTTATATATTCTTGAGAGGGAATGGGAGAGGAAAAACTGCCATTGTTTGGTCTCAGAGCTCTTCAGACAACGTGGCTTCTGCCATCTTCAAAGTTGAAGCACACGACTTCATTGCCTTTGGAATTAGCTTCAAGAATGAGGCACCTACAGGGGTTGCGTATACCTCACAAAACCAATCAGTGGCAGCATTTGTGTCAGCAGACAAAGTGGCATTTTATCATTGCGCATTTTACAGCACTCATAACACTCTCTTCGATCACAAAGGTAGGCATTACTATGATAGCTGCTACATTCAAGGCTCAATTGATTTCATATTTGGCCGTGGCAGATCGATCTTCCATAAAGCGGATATATTTGTGGTAGATGACAAAAGGGTAAAGATTCGAGGTTCAGTCACGGCTCAAAATAGGGAAAGTGAAGGTGACATGAGTGGGTTTGTCTTCCTCAAGGGCAAGGTTTATGGCATTGGTGGGGTGTACCTAGGAAGGGCAAAGGGTCCTTATTCTAGGGTGATTTTTGCTGAGACCTATCTCTCCATGACCATTGTCCCAGAAGGGTGGACCAATTGGAGCTATGATGGTAGCACAGAAAATCTATACCATGCGGAGTACGAATGCCATGGACCTGGAGCTTTAACAGCGGGACGTGCTTCTTGGTCAAGGCAGCTAACTAAGGAAGAAGTTGCCCCCTTCATATCTATTGATTACATTGATGGCAAGAATTGGTTACCAGTGTGGGTATAA 1047 0.4308 MASPPSWLLSFHASSLFIVAILIFCMSHCALGLDAQTVIDSPMLTEKLGINRTIIVDINGNGEFKSIQDAINSIPEGNTNWVIVHVRKGVYREKVHIPENKPYIFLRGNGRGKTAIVWSQSSSDNVASAIFKVEAHDFIAFGISFKNEAPTGVAYTSQNQSVAAFVSADKVAFYHCAFYSTHNTLFDHKGRHYYDSCYIQGSIDFIFGRGRSIFHKADIFVVDDKRVKIRGSVTAQNRESEGDMSGFVFLKGKVYGIGGVYLGRAKGPYSRVIFAETYLSMTIVPEGWTNWSYDGSTENLYHAEYECHGPGALTAGRASWSRQLTKEEVAPFISIDYIDGKNWLPVWV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00093 348 Pfam Pectinesterase 54 340 IPR000070 GO:0030599|GO:0042545
Pumo2g00093 348 Gene3D - 48 347 IPR012334 -
Pumo2g00093 348 FunFam Pectinesterase 49 348 - -
Pumo2g00093 348 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 50 344 - -
Pumo2g00093 348 ProSitePatterns Pectinesterase signature 2. 199 208 IPR033131 -
Pumo2g00093 348 SUPERFAMILY Pectin lyase-like 50 346 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00093 Pumo-Chr2 1914491 1916038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00093 16 344 Carbohydrate Esterase AT5G47500 35.795 3.42e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00093 - - gmx:100792967 648.277