Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00068 ATGTCCCATTTCGTTTTCAACAAGGGTGATCCCGTTGAGGTCACCAAAAACAACAACAATTTGTACTACCCTGCTTCAGTAATCCGTCCCCCTTCCAAGAACAAGAACCTCGTCTTCCTTGAATACCTCACTCTCTTCTCCCCTTCTCCCCCTAAACGCCTCCGTGAATACGTTAACGTCGCTAACGTCAGGCCCAAGCTTCCTCTCCAGCTCAACCCCTGGTTCAAAAAAGGTGACGCCGTTGATGCCTTCCGTCAAAGTCAAAACGCCTGGTGCCCCGCCACCGTCGCCGACATTCTCGAAAACTCCAGCTACCTCGTCGACTTTCACGGCGGCGATTCCGCCGTCCTCCACCACTCCGCCCTCCGCCTCCACCGCAATTGGGTGCGTGGGAACTGGGTCCCCGCACAGTTGCAGGAGCAGCTCCCTGAGAAGGAGATAAAGCCTGAAAATTTAAGGTTTAAGGTCAAATACAGCAGGAGACCACTAAAGGGATCAAAGTTTAAAAAAGGGATAATAGTGGAAGTCAGCAGGGATGACAAAGGTTATAAGGGTGCTTGGTTTCTTGCTACTATTGTTGATATAATAGGAAAAGACGGGTTTCAAGTAGAATATAGGGACCTGAAAACCAATGATGGCACCCAGCTCTTGAAAGAAGAAATTGATACAAGGTTTATTAGGCCCTGCCCACCTGAAGTTTCATTTGCTGGCTCTCTTAAACAGTTCCAAGAAGTTGATGCGTGGTATAATGATGGGTGGTGGGAAGTTGTGGTTCTTGAAGTACTAAATAACAGAGAATGTTTGGTTTCTTTCATTCACAAAGATGTATTGAAAATTGAAACTTCTAAACTAAGGCCTCATCAAGACTGGTTGGATGGAAATTGGGTGGTGTCTTCCAAGAAATCAAGTGAGCTGGTAAAGAAGTTTGGAGATCTGATGCCTAAAACCAAGAATGTTACTGGAATTAAATTAGTCTTGAAACGTCAAAAGCCTAATGAGAGTTCAAAGAAGCCTAGAGATGTAACAGCAAGGACCACTAACACCGAAAGCAAATTTGTGGCACATTTATGTAAAGGTGCAAAGGTAGAAGTCAGAAGTGATGAAGAAGGCTACCAAGGTGCCTGGTATACTGCCACTGTTGTTGACTCTTTGCAGAATGGCAAGTACTTGGTGGAGTATTTGACCCTGAAAACTGATGACTGGACTGAACAACTGAAAGAAGTAGCAGATGCTTCAGATATCAGGCCATATCCACCAGATGTCATACATGTTCACCGCTTTGCAGTGCGTGAAATGGTTGATGCTTGGTATAATGAAGGATGGTGGGTAGGTCAGGTATCTAGTGTTCTTATTGGCTTCAAGTATAAGGTTTACTTTTGGCATTCAAAGGAGGAGCTGGAATTGGAGCATTGTCATCTGAGGCCTCATCAAGAATGGATTGATGGAAAATGGGTGCTTTCTTCTTTGGTATGA 1473 0.4487 MSHFVFNKGDPVEVTKNNNNLYYPASVIRPPSKNKNLVFLEYLTLFSPSPPKRLREYVNVANVRPKLPLQLNPWFKKGDAVDAFRQSQNAWCPATVADILENSSYLVDFHGGDSAVLHHSALRLHRNWVRGNWVPAQLQEQLPEKEIKPENLRFKVKYSRRPLKGSKFKKGIIVEVSRDDKGYKGAWFLATIVDIIGKDGFQVEYRDLKTNDGTQLLKEEIDTRFIRPCPPEVSFAGSLKQFQEVDAWYNDGWWEVVVLEVLNNRECLVSFIHKDVLKIETSKLRPHQDWLDGNWVVSSKKSSELVKKFGDLMPKTKNVTGIKLVLKRQKPNESSKKPRDVTARTTNTESKFVAHLCKGAKVEVRSDEEGYQGAWYTATVVDSLQNGKYLVEYLTLKTDDWTEQLKEVADASDIRPYPPDVIHVHRFAVREMVDAWYNEGWWVGQVSSVLIGFKYKVYFWHSKEELELEHCHLRPHQEWIDGKWVLSSLV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00068 490 Pfam Agenet domain 174 231 IPR008395 -
Pumo2g00068 490 Pfam Agenet domain 9 68 IPR008395 -
Pumo2g00068 490 Pfam Agenet domain 359 419 IPR008395 -
Pumo2g00068 490 SMART agenet_At_2 425 481 IPR014002 -
Pumo2g00068 490 SMART agenet_At_2 73 130 IPR014002 -
Pumo2g00068 490 SMART agenet_At_2 166 234 IPR014002 -
Pumo2g00068 490 SMART agenet_At_2 237 292 IPR014002 -
Pumo2g00068 490 SMART agenet_At_2 354 422 IPR014002 -
Pumo2g00068 490 SMART agenet_At_2 4 71 IPR014002 -
Pumo2g00068 490 CDD Tudor_Agenet_AtDUF_rpt1_3 168 231 - -
Pumo2g00068 490 CDD Tudor_Agenet_AtDUF_rpt2_4 429 475 - -
Pumo2g00068 490 CDD Tudor_Agenet_AtDUF_rpt1_3 358 419 - -
Pumo2g00068 490 Gene3D - 72 132 - -
Pumo2g00068 490 Gene3D - 344 427 - -
Pumo2g00068 490 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 6 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00068 Pumo-Chr2 1500326 1503194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00068 365 490 PHD Transcription Factor Family AT5G58610 28.387 1.74e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00068 - - adu:107483399 565.459