Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00063 ATGGAAGTGAAAGGAAGGGTAAGCAACTCCACCACCACCACAATCCAAAGTGAGGATGAGATGGACCTTCGAAGAGGTCCTTGGACCGTCGATGAGGACCTTGCTCTCATCAATTACATTGCCAATCATGGGGAAGGTCGATGGAACTCCCTTGCCCGTTCAGCTGGACTCAAACGAACTGGCAAGAGCTGCAGATTGAGATGGTTGAATTATTTGCGTCCTGATGTTCGACGTGGCAACATCACACTTGAAGAACAGCTTCTTATTCTCGAGCTCCACGGTCGCTGGGGAAACCGATGGTCTAAAATTGCTCAATATTTGCCGGGAAGAACCGATAATGAGATAAAGAATTATTGGAGAACCCGTGTTCAAAAGCATGCCAAGCAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCCATGCGCTACCTTTGGATGCCAAGGCTGGTGGAGCGCATTCAAGCCGCCGCAGCCGCCACCGCCGCCGCTGCTGCTGCCACCGCCGGTTCTCCAACAGCATCTGCCAGTGCTACCACAACCATCACCACCACCAACAATAACACCAGATACAACAACATTTATGACAACAACCTTAACAACAACAGTTTTGAGGTGCACAGTGGGAACATGATGTTGAGTCCAGCAATCATGAACAACAACAACAACTTTGGTGGTTCACAAAGTTACACTCCAGAGAATAGTAGCACAGGTGCATCATCGGACTCGTTTGGGACTCAGGTTTCGCCTGTCTCCGACTTGAATCAGGATTATTACAATAATGTCACAGTTGGGAATAACAACAATAACCCTAATCCTGAGTATTATCAACAAGCACATGATCAACTCAACTTTTTAGACTGCATCACAAGCCCATCAGGGATGTTCCCTCAGGAGCTGGATTTCCAATCCATGGAACCAAACACTTCTTGGATTAATCAGAGTAATGGGGACACATCCAACGGTTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACAACTCACTGACAACATGTGA 1023 0.4673 MEVKGRVSNSTTTTIQSEDEMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHGRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAATAAAAAATAGSPTASASATTTITTTNNNTRYNNIYDNNLNNNSFEVHSGNMMLSPAIMNNNNNFGGSQSYTPENSSTGASSDSFGTQVSPVSDLNQDYYNNVTVGNNNNNPNPEYYQQAHDQLNFLDCITSPSGMFPQELDFQSMEPNTSWINQSNGDTSNGFWNVENMLLFQQLTDNM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00063 340 CDD SANT 93 121 IPR001005 -
Pumo2g00063 340 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Pumo2g00063 340 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 200 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo2g00063 340 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Pumo2g00063 340 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Pumo2g00063 340 MobiDBLite consensus disorder prediction 1 20 - -
Pumo2g00063 340 Coils Coil 339 340 - -
Pumo2g00063 340 MobiDBLite consensus disorder prediction 1 17 - -
Pumo2g00063 340 Gene3D - 22 78 - -
Pumo2g00063 340 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Pumo2g00063 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Pumo2g00063 340 CDD SANT 27 72 IPR001005 -
Pumo2g00063 340 FunFam MYB transcription factor 82 145 - -
Pumo2g00063 340 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Pumo2g00063 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Pumo2g00063 340 SMART sant 24 74 IPR001005 -
Pumo2g00063 340 SMART sant 77 125 IPR001005 -
Pumo2g00063 340 MobiDBLite consensus disorder prediction 225 247 - -
Pumo2g00063 340 Gene3D - 82 145 - -
Pumo2g00063 340 FunFam Myb transcription factor 25 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00063 Pumo-Chr2 1399850 1401723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00063 18 327 MYB Transcription Factor Family AT3G06490 54.799 1.34e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo2g00063 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00063 K09422 - gmx:100805341 512.686