Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00051 ATGGCGACGGCGGAGGCAGCTTCTGCTGGGCTTGGTCCCAGATATGCACCTGATGATCCTACCCTTCCACAACCGTGGAAGGGGTTGATTGATGGCAGCACTGGTCTGTTATACTATTGGAATCCTGAAACCAATGTTACACAATACGAAAAACCGGCTCCGGTAACGCCACCTGTGCCTTCAGGCCCTGCGCCTGTGGCTTCTGCACCAAGCTTGGCGCCTATACCGGGGGCTCATATGCAGCCTGGTGGGATGATGCAGCAGCACGGGCAGCAGATGCTGCAAGTACAATCCTCGCAACAGCAGATGGGTCACCTTGCCCAACAGCACGGGCAATCGATGCCGCCGCAGCAACAGCAGCAGAGTCCCCATATGGCGCAGGTCACTCAGCAGCAGTCCTCTCAGGGTGCTCAGTCAGCACAGCAGCCGAGCCAACAAGGGCAGCAAATGATGCAGCAGCCTCAAGGGCAGCCAATGATGCAGCCTCAAGGACATCAAGCCAGGCTGCAAATGATGCAGCCTCAGGGACAGCAAATGCATCATCAGATGCCGCCACAGGCAATCCATTCCCAGCATTTTGGGCAAGGAACACCTCAGGATCATGGCTCACATATTGTACAACCACAAGCACATCAATTCACTCCACAAAACATGCATTACATGTCATATCAGCAAAATGCGATTACATCCAGGCAACCAAACTCCCAGCACATTCCGCCAAACATGGTATCACCTGGGCAACCTAACTCCCAGCAGGTTCAGCATAACATGCATGGTCAGCCCTTTGAAAATCAACAAACAGCATTTCCTAAGGTAGAGGAAACGGAGTTTAAAAATGGAAGCCAGGTTGGACATTCACCATCCCAGTATCCACAAAGGAGTGCCTTGCCTGTTCAGAACAGCCAGAACATTCCTGCTGAAGTTGGTTCTGGTCAAGTGCCTAATGTAGGTGTCAATGCTGGCCAACCACAGCAATTCAGGGCCTTATCAGGCAGTATGCAGCAATCGCCATCTGGATCTGATTTATATTACCAACATGGTCCTAACTTTCATAACCAGATGAGCCCAGGAATGATGCATGGTCATCCATCCAATGTCCATCCTGCTGGCCAAAAGATGGGTCACGATGATAATTTATGTGGTAGAGCAGGGAATGAATATTACTATAATTCTAACAAAGATATGTCAACAATGGGTCGTCAGCAGCCAGATATTACTCCAATACCCATTCCAAGAAATCAGCAGGATATGAGGATTGGCAACGCTCCTTTTCAAAATGTAATGCCAAGTGGAAATGGAAGTGGTATTGCTGGGAATTCTGTGCCTAGCATGTTTGTTCCTCCAATAGGAGGACCTTCACCTCTCTCTACTAACCCTTTAATGAGGCCTCCTTATATGGGATCTTCGGATGCTACTGATCTCTCACCAGCTGAAATTTACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATACTGAGGGAGATATATTCTGCTGGCTTCTCTAGTCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATAGTCGCAATTGCCAAAACAGGCTCTGGGAAAACATTAGGCTACTTAATTCCTGCCTTCATTCTTCTTAGACAGCGACGTAATAATTCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCGACACAGATCCAAGATGAGGTCATCAAATTTGGTCGATCATCACGAGTCTCTTGCACGTGCTTGTATGGTGGAGCGCCTAAAGCCCTTCAACTAAAAGAGTTAGATCGGGGAGCAGACATTGTTGTTGCCACACCCGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGACATGGGTTTTGAGCCTCAAATTCGTAAGATTGTGAATGAGATTCCACCACGCAGACAAACTCTTATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTGGTGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAGTGTAGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAGAGGCGTTTGGAGCAGATCCTCAGATCCCAAGAACGGGGTTCTAAGGTCATAATATTTTGTTCCACAAAGAGGTTATGTGACCAGCTTGCTCGTAGTATTGGCCGGACTTTTGGGGCTGCTGCAATTCATGGGGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGGACTGGGAAGTCACCAATTCTGGTTGCAACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTGGTGATCAATTATGATTTCCCCACCGGAATTGAGGACTATGTGCACCGTATAGGAAGAACTGGAAGGGCAGGTGCTACTGGAGTGTCGTATACCTTTTTCTCTGAGCAGGACTGGAAACATGCGGGTGATTTAATCAAAGTTTTGGAGGGTGCTAATCAGCACGTGCTTCCAGAGTTAAGACAGATGGCTTTGCGTGGGCCACCAAACTTTGGAAAGGATCGGGGTGGGATGAGTCGGTTTGACTCTGGTGGTGGTGGTGGGCGTTGGGATTCTGGTGGTCGTGGTGGCATGAGGGATGGTGGCTTTGGTGGTCGTGGAGGTGGTATGAGGGAGGGTGGCTTTGGTGGACGCGGTGGTGGCATGAGGGATGGTGGCTTTGGGGGACGTGGCGGTGGGATGAGGGATGGCGGTTTTGGTGGACGTGGTGGCGGCTTTGGTGGTCGTGGTGGCATGAGGGATGGAGGTAGTGGGCAAGGTGGGAGAGGTGATTTCTTTCCTGGTAGGGGCAACAGGGGTAGGGGATCTGGTGGCCCTCGTGGGGGTCATGTTGGTTGGGGTAGGGGTGAACGTGGTATGGATGATCGGTACAACATGGATGGGCGCGGACAAGGTCGTGGACGTGGAAGATTTGACAATAGAAGAGATGTTTCTTACAAAAGTGGAGGCAGAAGTTATAGTCGTAGCCCTGAAAGAGTCCGAACATGGGATTATAGCAGAAGTAGCAGCAGAAGCCGTAGCAGAAGCAGAAGCAGAAGTAGAAGTAGAAGCAGGAGCAGGAGTTGGAGCAGGGACCGTAGTCGAAGCCGCAGCTGGTCTCGTGGTCGTAGTCGCAGCTATAGCCGTAGTATTAGTCCGCGTCGTAGTCGCAGCCGTAGTCATGGTCGAAGTTACAGCCGCAGTCGTAGCCGCAGCCCCAGTTATGATAGGCGTGATAGGTCAGATCAACAACTTCCTGATCAAAAGGATCCCAGGGCACAGGAAGTAGGAACTTCAGATCCAAGAATGCTTCCTGGGTCTTCTGGTCCTGGCACACAAGGGAATTCCTTTTTGGGAACTGAACAAGTGGAGCCGCAACCTGTTGTTGGTAGCACTGATCCAGGTAATCCAGAAGCTGTAGCAGATCATAGTCATCAATCAGCTTCTGATATTTAG 3591 0.4948 MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPVTPPVPSGPAPVASAPSLAPIPGAHMQPGGMMQQHGQQMLQVQSSQQQMGHLAQQHGQSMPPQQQQQSPHMAQVTQQQSSQGAQSAQQPSQQGQQMMQQPQGQPMMQPQGHQARLQMMQPQGQQMHHQMPPQAIHSQHFGQGTPQDHGSHIVQPQAHQFTPQNMHYMSYQQNAITSRQPNSQHIPPNMVSPGQPNSQQVQHNMHGQPFENQQTAFPKVEETEFKNGSQVGHSPSQYPQRSALPVQNSQNIPAEVGSGQVPNVGVNAGQPQQFRALSGSMQQSPSGSDLYYQHGPNFHNQMSPGMMHGHPSNVHPAGQKMGHDDNLCGRAGNEYYYNSNKDMSTMGRQQPDITPIPIPRNQQDMRIGNAPFQNVMPSGNGSGIAGNSVPSMFVPPIGGPSPLSTNPLMRPPYMGSSDATDLSPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSSPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRTFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPPNFGKDRGGMSRFDSGGGGGRWDSGGRGGMRDGGFGGRGGGMREGGFGGRGGGMRDGGFGGRGGGMRDGGFGGRGGGFGGRGGMRDGGSGQGGRGDFFPGRGNRGRGSGGPRGGHVGWGRGERGMDDRYNMDGRGQGRGRGRFDNRRDVSYKSGGRSYSRSPERVRTWDYSRSSSRSRSRSRSRSRSRSRSRSWSRDRSRSRSWSRGRSRSYSRSISPRRSRSRSHGRSYSRSRSRSPSYDRRDRSDQQLPDQKDPRAQEVGTSDPRMLPGSSGPGTQGNSFLGTEQVEPQPVVGSTDPGNPEAVADHSHQSASDI 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00051 1196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 852 IPR027417 -
Pumo2g00051 1196 Gene3D - 474 707 IPR027417 -
Pumo2g00051 1196 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Pumo2g00051 1196 MobiDBLite consensus disorder prediction 999 1033 - -
Pumo2g00051 1196 CDD SF2_C_DEAD 717 846 - -
Pumo2g00051 1196 MobiDBLite consensus disorder prediction 1115 1141 - -
Pumo2g00051 1196 MobiDBLite consensus disorder prediction 50 204 - -
Pumo2g00051 1196 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 473 876 - -
Pumo2g00051 1196 MobiDBLite consensus disorder prediction 85 204 - -
Pumo2g00051 1196 FunFam probable ATP-dependent RNA helicase DDX17 465 706 - -
Pumo2g00051 1196 MobiDBLite consensus disorder prediction 877 1196 - -
Pumo2g00051 1196 SMART helicmild6 753 837 IPR001650 -
Pumo2g00051 1196 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Pumo2g00051 1196 MobiDBLite consensus disorder prediction 1042 1056 - -
Pumo2g00051 1196 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 732 876 IPR001650 -
Pumo2g00051 1196 MobiDBLite consensus disorder prediction 1 28 - -
Pumo2g00051 1196 SMART ultradead3 517 720 IPR014001 -
Pumo2g00051 1196 Pfam WW domain 22 52 IPR001202 GO:0005515
Pumo2g00051 1196 Gene3D - 708 878 IPR027417 -
Pumo2g00051 1196 Pfam Helicase conserved C-terminal domain 729 837 IPR001650 -
Pumo2g00051 1196 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 529 703 IPR014001 -
Pumo2g00051 1196 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 498 526 IPR014014 GO:0003724
Pumo2g00051 1196 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Pumo2g00051 1196 Pfam DEAD/DEAH box helicase 522 692 IPR011545 GO:0003676|GO:0005524
Pumo2g00051 1196 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 649 657 IPR000629 -
Pumo2g00051 1196 SMART ww_5 21 54 IPR001202 GO:0005515
Pumo2g00051 1196 FunFam ATP-dependent RNA helicase RhlB 707 879 - -
Pumo2g00051 1196 MobiDBLite consensus disorder prediction 1150 1174 - -
Pumo2g00051 1196 CDD WW 23 54 IPR001202 GO:0005515
Pumo2g00051 1196 MobiDBLite consensus disorder prediction 1085 1111 - -
Pumo2g00051 1196 MobiDBLite consensus disorder prediction 230 255 - -
Pumo2g00051 1196 MobiDBLite consensus disorder prediction 1070 1084 - -
Pumo2g00051 1196 MobiDBLite consensus disorder prediction 53 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00051 Pumo-Chr2 1199398 1205995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00051 486 875 Eukaryotic Initiation Factors Gene Family AT3G19760 33.504 2.32e-64 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00051 K12823 - gmx:100807830 1508.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00051 2 1199398 1205995 Pumo2g00051 2 1199398 1205995 ECH