Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00043 ATGTGCAGCAGCATCTTTGGGCCAATAATCATGGACAATTACCAAGGTGATTTAACTGACATACTCCGAGCCAGTGGTGGAGCATATGGTAGCAGCAGCAGCTGCAGCACAGGAGGCACAGGAGCTTCATCATCTGATCAATTACCTACCACATCTCATCATCAACGCACTCACAACAGTACCCTCTCTCATAATAATGATCACTGGCACCACCAACACTTCTCTTCTTCTGATCCCATCACTTTCTCATCTTCTTCTGTTGTGCTTCATCAAGGTCCCAGAGGAGGAGGCCCCAACTTTGGTGACCCTTTCTCAACCATGAGAGATCCCTTCCTTCAGGAGCTTGACATGCCTTCAGGTTCTTCTGCCAGCTACTTCACTACTGGGGGATTGGAAGAAGCAGCTGCAAGTTTTGGTGCTGTTAATACTAATAATGCTAATACTACTAGTTCTACTGTTTTTGCTACTGCTGCACACAAGATTCTTGAGGAACATGACATGATCAGAAGACCTTGTAAAAACATATTCTCAAACATGATTCAGATCTCTCCCAATGCTGCAAAGTTACCAGTCTCACCCTATGATTCCACCACCACACCCATGGCACCTTCTCCAAGGCCAATTAAGCCTCCTGCTGTGGTTTCACCCAACATGGTTAATGCAAACACCTCCAAGGAGTGCCTTGTGGACACCACAGGAGTGCAGATCTCATCTCCACGGAATACGGGTCTTAAAAGAAGGAAGAACCAGGTAAAAAAAGTGGTTTGTATTCCTGCACCAGCAGCTGCAAACAGCAGGCAAACTGGAGAGGTAGTTCCGTCTGATTTGTGGGCTTGGAGAAAATATGGTCAGAAACCCATTAAAGGTTCACCTTATCCCAGGGGTTATTACAGATGCAGCAGCTCAAAGGGTTGCTCTGCGAGGAAGCAAGTTGAGAGGAGCAGGAATGACCCAAACATGTTGGTCATTACATACACATCAGAGCACAACCATCCATGGCCAACTCAAAGAAATGCTCTGGCTGGTTCAACAAGATCACAGCCATCCAAGAGCAATGCTGCTGCCAATTCAAAGAATTCAGAAGGCTCAAACCCCCAAAAGGGCACAGCAACAAAAGCAAAGGATGAGCAGCAGCAAGAGATCAGCAACAATAGTGAGGGCAATGTGTCCCCAGTTGTGGCTGGGAACTCATCAAACAGTGTGAAGGAAGAGAATATGGAAGACAAAGAGAAGCAGCTTGAGATGGATGAGGGAGAGTTCAGTGATGGACTCTCTTACAAGCCTAGTTTGATGGATCAGAGTAATAACCAAGCTGAGGACTTCTTTGCTGAGTTGGGAGAAATAGAAGCTGACCCACTAGACCTTTTGTTCACTCAAGGTTTTGGTGCAGGTGATGATCAAAGGGAATCCAAGGCCTTAGATCCATTTCATCTCTTTGACTGGTCAGGAGACAACAACAACAACACCACCAATACCAACACAAGTAGTTCATTTGAAGAACCTAATAATAAGAGAAGGTTATAA 1524 0.456 MCSSIFGPIIMDNYQGDLTDILRASGGAYGSSSSCSTGGTGASSSDQLPTTSHHQRTHNSTLSHNNDHWHHQHFSSSDPITFSSSSVVLHQGPRGGGPNFGDPFSTMRDPFLQELDMPSGSSASYFTTGGLEEAAASFGAVNTNNANTTSSTVFATAAHKILEEHDMIRRPCKNIFSNMIQISPNAAKLPVSPYDSTTTPMAPSPRPIKPPAVVSPNMVNANTSKECLVDTTGVQISSPRNTGLKRRKNQVKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRNDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKSNAAANSKNSEGSNPQKGTATKAKDEQQQEISNNSEGNVSPVVAGNSSNSVKEENMEDKEKQLEMDEGEFSDGLSYKPSLMDQSNNQAEDFFAELGEIEADPLDLLFTQGFGAGDDQRESKALDPFHLFDWSGDNNNNTTNTNTSSSFEEPNNKRRL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00043 507 MobiDBLite consensus disorder prediction 299 318 - -
Pumo2g00043 507 MobiDBLite consensus disorder prediction 326 401 - -
Pumo2g00043 507 Pfam WRKY DNA -binding domain 275 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g00043 507 SMART WRKY_cls 273 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g00043 507 Coils Coil 399 419 - -
Pumo2g00043 507 FunFam probable WRKY transcription factor 14 247 327 - -
Pumo2g00043 507 MobiDBLite consensus disorder prediction 326 410 - -
Pumo2g00043 507 MobiDBLite consensus disorder prediction 29 76 - -
Pumo2g00043 507 MobiDBLite consensus disorder prediction 478 507 - -
Pumo2g00043 507 MobiDBLite consensus disorder prediction 29 59 - -
Pumo2g00043 507 ProSiteProfiles WRKY domain profile. 268 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo2g00043 507 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 16 457 IPR044810 GO:0003700
Pumo2g00043 507 MobiDBLite consensus disorder prediction 481 500 - -
Pumo2g00043 507 MobiDBLite consensus disorder prediction 60 74 - -
Pumo2g00043 507 SUPERFAMILY WRKY DNA-binding domain 271 334 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo2g00043 507 Gene3D WRKY domain 247 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00043 Pumo-Chr2 1087046 1091048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00043 1 498 WRKY Transcription Factor Family AT1G30650 42.490 1.59e-90 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo2g00043 WRKY 2e-25 CL0274