Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00032 ATGATGATACAAGTTGGGTCTGAGAACATTGATATGACAGCTGCACCTAATGGTGGTGGTGCAAACGGCGTTCACATGATTTTAACTGATCCAAATGTATTTGCTTGTTGCCATTGTGGTGATACATTAACCATTCCAGTCTACCAGTGCATCAAGGGGCACATAATTGTTTGTTCCTCCTGCTGTAGCAAGCTTGGGGACAAGTGTCCCTTTTGCTCAACATTCATCGGGGAAAGCCGTTGCCGAGCCATTGAGGCAGTGATGGAATCGTTGAAAATTGCGTGCTCAAATGCAGAACAAGGTTGTAATGCAATGGTGAGGTACAGTGAGAAACATGAGCATCAGAAGACATGCACCTTTGCACCATGTTTATGTCCGCAGCCACGTTGCGACTGGATTTCCAATTGCAACGAATTAGGGCAACATTTCAAGCAGAAGCACTTCCACAAGAGAATACCATTCGAATATGGCGAGTTTTTCGACGTGCCGTTGAAGCGCAACACGACGACTCGTATTCTTCAAGCTGTGAGTGATGGAAAACTGTTTGTGCTCAGCAATGATATGAGGGAGAGGGAAAATTCATTGATTCTTTTTCACAATGGGCCTGACTCGTTGGTCCCTCAGTTTCATTATGAAGTTAGGGCAAAGTCTGATGGTGCTGTTTTATTGCCCCGAACTGTTGTGGACTGCACTCAAGGAGTGACATTTGAGTTTTCTTTGGCAAGCTTTTTTTCCATTCCACTTGAGATGTGGTCTTGCAAAGGACAGATCAAACTGCAGTTTCGGATCACTACTGTGCGTGCTGCAAAAAAGGCTGTTAGTGAAGATAAGGATGAGCAAGAAAGAGATCCAACACCAAACGGGAGGCCCAAAAGGCTCAGGAAACGCCCAGCTGGATGGGACGACTATGATCACTGA 918 0.4542 MMIQVGSENIDMTAAPNGGGANGVHMILTDPNVFACCHCGDTLTIPVYQCIKGHIIVCSSCCSKLGDKCPFCSTFIGESRCRAIEAVMESLKIACSNAEQGCNAMVRYSEKHEHQKTCTFAPCLCPQPRCDWISNCNELGQHFKQKHFHKRIPFEYGEFFDVPLKRNTTTRILQAVSDGKLFVLSNDMRERENSLILFHNGPDSLVPQFHYEVRAKSDGAVLLPRTVVDCTQGVTFEFSLASFFSIPLEMWSCKGQIKLQFRITTVRAAKKAVSEDKDEQERDPTPNGRPKRLRKRPAGWDDYDH 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00032 305 ProSiteProfiles Zinc finger SIAH-type profile. 90 148 IPR013010 GO:0008270
Pumo2g00032 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 143 IPR013083 -
Pumo2g00032 305 Pfam Seven in absentia protein family 80 218 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pumo2g00032 305 SUPERFAMILY TRAF domain-like 90 252 - -
Pumo2g00032 305 MobiDBLite consensus disorder prediction 270 305 - -
Pumo2g00032 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 23 266 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00032 Pumo-Chr2 1000184 1003343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00032 4 147 C3H Transcription Factor Family AT2G41980 28.188 1.17e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00032 K04506 - gmx:102662420 441.425