Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00015 ATGGTTCTGAAATTTGTGTATATCATCATTTTGATGATATGGCGCATATATCCATTAACATCTGCACAGTATGAGAATCAGGCTATAGCACTACCCGGTTGTGATCCGAAATGTGGAAATATTTCCATTCCTTTCCCTTTCGGAATGCACGATCCCAATTGCTATGCAAGCGAGTCGTTTGAAATAGAATGCAGAAACATTACTTCACGAGGTGATCAGAAACCTTACCTCAAATATATAGATTTGGAGGTAATATTCATTGATCTCTCGGGTATGGTTTTGATCATGAATCCGATTTACCATAGTCGGAATGGGAACTGCCAAAGCCAAAGGAAAGAGACAGGCATAAATCTGGGAGGAGGTCCTTTTGTGTATTCCCAGGATTACAACTCATTTGTGGCCGTAGGTTGCGGAAACACTGCTTCCTTCTGGTTAAGCGGCTCGGAAGTTGGTGGTTGTGTATCCATGTGTGGCCACGACCAAAAAAATGACAGTGAAATCTACATTGCAAATTGTCGTGGCAGGCACTGCTGCGAGACTTCACTGCCGCCGCATCTTTCAGAATATAACGTCAGTTTTGTTGGTGACGAAGGGTGCGGTTACGGGCTGATTAGAACAGATTATTACAAGTTAGTGTACAGTTACAATTACCGGAGAGGAGATTATTATAAGTTGTACAATTACAGTAATTACCCGGATCTGACGATTGAGGACCTAAATCATTTAAATGATGTTCCTGCGGTGCTTGAATGGGAGATTCCAATTGACACGCTCAACAACTCTTCCTTCTTAGTCAGTGCAGATGCATACTGCTTTAACACTAGTGTTGCATCTCCCCGATCACGAGGTAGAACATGTGAGTGCAAATATGGCTTCGAGGGCAATCCCTACATTGGAGGAGGCTGTAAAGGGCCTAAAGACAAGAAAAATCGAGCAAAGTGGGCCATAATAGGAGTTTCTTCAAGCCTCGGAACCGTCATTTTACTCCTTGGTCTGTGGTGGTTGCGTAAAGTTGTAAGGAAAAGGATAGCAATGAAACGCAAGGAAAAGTTCTTCAAACAAAATGGAGGATTGTTGTTAAAACAAAGACTCTCTTCAGGTGAAGTTAATGTTGACAAAATTAAACTCTTTACCATAAAGGACTTAGAGAAGGCCACCGATCACTTTAATATAAATAGAGTACTTGGGAAGGGAGGCCAAGGTACCGTATACAAAGGGATGCTAGTAGATGGAAAAATTGTTGCAGTGAAAAAATTTAAGGTCAACGGAAATGTTGAAGAATTCATCAATGAATTTGTTATTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTGTTAGGATGTTGTTTGGAGACTGAAGTCCCTTTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTTCGAATATTTACATGGACGAAATGAGGACTTACCAATGACATGGGATATGCGTTTGAGAATTGCCACTGAAGTTGCTGGAGCCCTATTTTACTTACACTCAGCTGCAGCTCAGCCCATTTATCACAGAGACATTAAGTCAACAAATATATTATTGGATGGGAAGTATAAGGCAAAAGTAGCAGACTTTGGTGCATCAAGAATGGTTTCCATTGAAGCTACTCATCTCACTACTGCAGTTCAAGGAACTTTTGGATACTTGGATCCTGAATATTTCCATACTGGTCAATTGACAGAGAAGAGTGATGTCTACAGCTTTGGAGTGGTTCTTGTTGAACTTTTAACAAGGAAAAAGCCAATATCCTCAGCAAAACAACAAGAACCTAAAAGTTTAGCTTCATATTTTCTTCTTTGTATGGAGGAAAATCGTTTGTTTGATATCTTTGATGAAAGAATCATGCAGGAAGGAGAGAAAGAACACATCATTGTAGTTGCCAATCTTGCAAGAAGATGCTTAGAGATGAATGGAAAAAGACGACCAACTATGAAAGAGGTCACATTAGAATTGGAAAGTATCCAAAAATCGGAAAAGCAGTCTAATGCACAAGAACACCATGAAGAACTTGAGCTTGCTGGAACTGAGGACTGTCAATTTTGGGCTACATATTCTACAACTTCAAATTCAGAGCAAACTTCAGATAGCATAGCATCAACCTTGGAGATTATGCCTATTCTTATCAAATAA 2148 0.3971 MVLKFVYIIILMIWRIYPLTSAQYENQAIALPGCDPKCGNISIPFPFGMHDPNCYASESFEIECRNITSRGDQKPYLKYIDLEVIFIDLSGMVLIMNPIYHSRNGNCQSQRKETGINLGGGPFVYSQDYNSFVAVGCGNTASFWLSGSEVGGCVSMCGHDQKNDSEIYIANCRGRHCCETSLPPHLSEYNVSFVGDEGCGYGLIRTDYYKLVYSYNYRRGDYYKLYNYSNYPDLTIEDLNHLNDVPAVLEWEIPIDTLNNSSFLVSADAYCFNTSVASPRSRGRTCECKYGFEGNPYIGGGCKGPKDKKNRAKWAIIGVSSSLGTVILLLGLWWLRKVVRKRIAMKRKEKFFKQNGGLLLKQRLSSGEVNVDKIKLFTIKDLEKATDHFNINRVLGKGGQGTVYKGMLVDGKIVAVKKFKVNGNVEEFINEFVILSQINHRNVVKLLGCCLETEVPLLVYEFIPNGNLFEYLHGRNEDLPMTWDMRLRIATEVAGALFYLHSAAAQPIYHRDIKSTNILLDGKYKAKVADFGASRMVSIEATHLTTAVQGTFGYLDPEYFHTGQLTEKSDVYSFGVVLVELLTRKKPISSAKQQEPKSLASYFLLCMEENRLFDIFDERIMQEGEKEHIIVVANLARRCLEMNGKRRPTMKEVTLELESIQKSEKQSNAQEHHEELELAGTEDCQFWATYSTTSNSEQTSDSIASTLEIMPILIK 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00015 715 SMART serkin_6 389 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00015 715 SUPERFAMILY Protein kinase-like (PK-like) 373 655 IPR011009 -
Pumo2g00015 715 Pfam Wall-associated receptor kinase galacturonan-binding 34 89 IPR025287 GO:0030247
Pumo2g00015 715 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 668 IPR045274 GO:0007166
Pumo2g00015 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Pumo2g00015 715 Gene3D Phosphorylase Kinase; domain 1 361 462 - -
Pumo2g00015 715 FunFam Wall-associated receptor kinase 2 359 462 - -
Pumo2g00015 715 FunFam Wall-associated receptor kinase 2 463 679 - -
Pumo2g00015 715 CDD STKc_IRAK 395 660 - -
Pumo2g00015 715 Pfam Protein kinase domain 390 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g00015 715 Gene3D Transferase(Phosphotransferase) domain 1 463 685 - -
Pumo2g00015 715 ProSiteProfiles Protein kinase domain profile. 389 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00015 Pumo-Chr2 742952 759962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00015 7 711 Receptor kinase-like Gene Family AT1G16260 41.678 1.93e-177 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Pumo2g00015 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00015 - - gmx:100799848 974.926