Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo294g00006 ATGGGTGATGGTTTGATGATACAAGAGGGAAGTTCAGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGATTATTTGGTTCGTGTTATAAATGCCCTAGCTAAACCAATTGATGGTCGAGGGGAAATTTCAGCTTCGAAATCTCGATTAATCAAATCTCCCGCTCCTGGTATTATTTCGAGACGTTCCGTATATAAGCCTCTCCAAACAGGACTTATTGCTATTGATTCGATGATCCCCATAGGACATGGCCAGCAGGAATTAATTATTGGAGATAGACAAATGGCTGTTGGTCAAAAAGCATCTTCCGTGGCTCAAGTGGTGACTACCTTACAAGAAAGAGGAGCAATGGAATACACTATTGTAGTAGTTGAAACAGCGGATTCTCCAGCTACATTACAATACCTCGCCCCTTATACAGGAGCAGCTTTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATCATTTATGACCATCTCCCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCTGGTCGCGAAGCTTATCCAGGGAATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGGGCCACTAAATTAAGTTCTCAGTTAGGCGAAGGAAGTATGACTGCTTTACCAATAGTTGAAACTCAATCGGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTCTTATATGCCAATCTATTCAATGCTGGAATTAGACCTGCTATTAATGTCGGTATTTCTGTTTCCAGAGTTGGATCAGCAGCTCAAATTAAAGCCATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTAGCAAAACTCGCAGAATTAGAAGCTTTTGCCCAATTTGCTTCTGATCTCGATAAAGCTACCCAAAATCAATTAGCAAGAGGTCAACGATTACGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTTACCGTGGAAGAACAGATAATAACTATTTATACCAAAACGAATGGTTATCTTGATTCATTAGAAATTGGACAGATGAATAAACCTCAATTCAAAGAAATCATATCTTCTACCAAGACATTCACTGGGGAAGCAAAAGCCCTTTTGAAGGAAGCTATTCAGGAACAGATGGAACTCTTTTTACTACAGGAACAGAATTAG 1188 0.3914 MGDGLMIQEGSSVKATGRIAQIPVSEDYLVRVINALAKPIDGRGEISASKSRLIKSPAPGIISRRSVYKPLQTGLIAIDSMIPIGHGQQELIIGDRQMAVGQKASSVAQVVTTLQERGAMEYTIVVVETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDHLPKQAQAYRQMSLLLRRPPGREAYPGNVFYLHSRLLERATKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLYANLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAKLAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIITIYTKTNGYLDSLEIGQMNKPQFKEIISSTKTFTGEAKALLKEAIQEQMELFLLQEQN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo294g00006 395 ProSitePatterns ATP synthase alpha and beta subunits signature. 257 266 IPR020003 GO:0005524
Pumo294g00006 395 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 274 388 - -
Pumo294g00006 395 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 99 266 IPR000194 GO:0005524
Pumo294g00006 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 272 IPR027417 -
Pumo294g00006 395 Gene3D - 99 273 IPR027417 -
Pumo294g00006 395 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 99 389 IPR005294 GO:0015986|GO:0045261|GO:0046933
Pumo294g00006 395 Gene3D - 1 98 - -
Pumo294g00006 395 CDD F1-ATPase_alpha_CD 19 269 IPR033732 GO:0032559
Pumo294g00006 395 FunFam ATP synthase subunit alpha 274 362 - -
Pumo294g00006 395 CDD ATP-synt_F1_alpha_C 277 389 IPR000793 GO:0015986
Pumo294g00006 395 Pfam ATP synthase alpha/beta chain, C terminal domain 273 359 IPR000793 GO:0015986
Pumo294g00006 395 FunFam ATP synthase subunit alpha, mitochondrial 97 273 - -
Pumo294g00006 395 Gene3D - 274 389 IPR038376 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo294g00006 11 300 Primary Pumps ATPases(2) AT1G20260 26.404 6.99e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo294g00006 K02111 - gmx:121173224 643.654