Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo294g00004 ATGGTAACCATTCGTGCAGTTGAAATTAGTAAAATTATCCATGAACGCATTGAGCAATATAATACGGAAGTAAAAATTGTAAATACGGGTACCGTACTTCAAGTAGGTGATGGTATTGCTCGTATTTATGATCTTGATGAAGTAATGGCAGGTGAATTAGTGGAATTTGAAGAGGAGGGAAGTTCAGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGCTTATTTGGTTCGTGTTATAAATGCCCTAGCTAAACCAATTGATGGTCGAGGGGAAATTTCAGCTTCGGAATCTCGATTAATCAAATCTCCCGCTCCTGGTATTATTTCGAGACGTTCCGTATATAAGCCTCTCCAAACAGGACTTATTGCTATTGATTCGATGATCCCCATAGGACATGGCCAGCAGGAATTAATTATTGGAGATAGACAAATGGCTGTTGGTCAAAAAGCATCTTCCGTGGCTCAAGTGGTGACTACCTTACAAGAAAGAGGAGCAATGGAATACACTATTGTAGTAGTTGAAACAGCGGATTCTCCAGCTACATTACAATACCTCGCCCCTTATACAGGAGCAGCTTTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATCATTTATGACCATCTCCCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCTGGTCGCGAAGCTTATCCAGGGAATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGGGCCACTAAATTAAGTTCTCAGTTAGGCGAAGGAAGTATGACTGCTTTACCAATAGTTGAAACTCAATCGGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTCTTATATGCCAATCTATTCAATGCTGGAATTAGACCTGCTATTAATGTCGGTATTTCTGTTTCCAGAGTTGGATCAGCAGCTCAAATTAAAGCCATGAAACAAGTAGCTGGTAAATTAAAATTGGAATTAGCAAAACTCGCAGAATTAGAAGCTTTTGCCCAATTTGCTTCTGATCTCGATAAAGCTACCCAAAATCAATTAGCAAGAGGTCAACGATTACGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTTACCGTGGAAGAACAGATAATAACTATTTATACCAAAACGAATGGTTATCTTGATTCATTAGAAATTGGACAGATGAATAAACCTCAATTCAAAGAAATCATATCTTCTACCAAGACATTCACTGGGGAAGCAAAAGCCCTTTTGAAGGAAGCTATTCAGGAACAGATGGAACTCTTTTTACTACAGGAACAGAATTAG 1338 0.3879 MVTIRAVEISKIIHERIEQYNTEVKIVNTGTVLQVGDGIARIYDLDEVMAGELVEFEEEGSSVKATGRIAQIPVSEAYLVRVINALAKPIDGRGEISASESRLIKSPAPGIISRRSVYKPLQTGLIAIDSMIPIGHGQQELIIGDRQMAVGQKASSVAQVVTTLQERGAMEYTIVVVETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDHLPKQAQAYRQMSLLLRRPPGREAYPGNVFYLHSRLLERATKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLYANLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAKLAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIITIYTKTNGYLDSLEIGQMNKPQFKEIISSTKTFTGEAKALLKEAIQEQMELFLLQEQN 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo294g00004 445 Gene3D - 324 439 IPR038376 -
Pumo294g00004 445 CDD F1-ATPase_alpha_CD 69 319 IPR033732 GO:0032559
Pumo294g00004 445 FunFam ATP synthase subunit alpha 324 412 - -
Pumo294g00004 445 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 324 438 - -
Pumo294g00004 445 Gene3D - 149 323 IPR027417 -
Pumo294g00004 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 322 IPR027417 -
Pumo294g00004 445 Gene3D - 2 72 IPR023366 -
Pumo294g00004 445 CDD ATP-synt_F1_alpha_C 327 439 IPR000793 GO:0015986
Pumo294g00004 445 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 68 IPR036121 GO:0046034|GO:1902600
Pumo294g00004 445 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 148 439 IPR005294 GO:0015986|GO:0045261|GO:0046933
Pumo294g00004 445 Hamap ATP synthase subunit alpha [atpA]. 2 440 IPR005294 GO:0015986|GO:0045261|GO:0046933
Pumo294g00004 445 ProSitePatterns ATP synthase alpha and beta subunits signature. 307 316 IPR020003 GO:0005524
Pumo294g00004 445 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 149 316 IPR000194 GO:0005524
Pumo294g00004 445 Pfam ATP synthase alpha/beta chain, C terminal domain 323 415 IPR000793 GO:0015986
Pumo294g00004 445 FunFam ATP synthase subunit alpha, mitochondrial 147 323 - -
Pumo294g00004 445 Gene3D - 73 148 IPR027417 -
Pumo294g00004 445 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 58 IPR004100 GO:0046034|GO:1902600
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo294g00004 25 350 Primary Pumps ATPases(2) AT4G38510 26.065 8.36e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo294g00004 K02111 - gmx:121173224 718.383