Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo28g00003 ATGGATCACAGACCGAAATCCAAGGACTCACTCTCTTACTCCACTCTCTTCAATCTCGAGCCTTTGATGAACTTTCAACTTCCAGAGCAAGATGATGACTTTGATTATTATGGGAATAGTAGCCAGGATGAGAGCAGAGACAGCCAAGTAGGTGGGGGAATTGCAAATCTCAGTAATGGGAATGTGCATGGAAGGGAGGTGAATTTGTTGAAGAGGAGGTGGTCTCAAAACAGTGACAACGAGGAGAAGAGCGGTTTTTATGGGACACACATGACCGAGGAGCGATATCGATCGATGCTGGGAGAGCATATTCAGAAATACAAGAGGAGGTTTAAGGGTACCTTGAGTAGTCCTGCCCAAAATCAGGCTGCTGTTCCACTTGTGAAAAGCAACACGGGATTAAAAGCTCGCAAGTCAGGGAATGAGCGCAGGGGAGGATCACATGTGGCAGAGACTACATCGGAATGGATGAATGATTCTGGTTCTCAGAAACCTGGAAACTACCGTGATGCAGATTTCTCGCCGCAATATGGCACTGATAGGATTATGTATGAACCTGCATCTTTGGATATTGGGGATGGAATCATTTACAAGATTCCTCCAATCTATGATAAGTTGGCTGGAGCTCTGAACCTCCCAAGCTTCTCGGATATCCATGTTGAGGATTTTTACTTAAAGGGTACCTTGGATTTGGGCTCCTTGGCTGAAATGATGGCTGCTGATAACAGATTTGGGAACAGAAACCGAGCAGGCATGGGGGAAGCAATACCCCAATTTGAATCACTGCAGGCACGACTGAAGGCCATGTCAGCTTCTAATTCTGCTCATAAATTCAGTCTGAAAATGTCTGATGTTGATTTGAATTCCTCCATTCCGGAGGGGGCAGCGGGAAGTATAAGGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTAAAGGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTGAAGAAAGACCCTGCTTTGATAGAGAAGGAGGAAATGGAAAGATGTGGAAAAATTTGGGTAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGAACTTCACTACTTTTCATCGAAAGCAGCTGATTGATGCCAAGAGGGTCTCAGAGACTTGTCAAAGAGAGGCATGGCCCTATTTCCCTCCTTTAATACATTTTCTATCTGTCAGAATGAAAGTTAGTAGATCCCTTAAATGGACGAGGACTGCCGGTATGCGCACCCGGAAACTAGCTAGAGACATGTTACTGTTCTGGAAACGAATAGATAAGGAGATGACAGAAGTGAGGAGGAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGCGAACAGGAAATACGAGAGGCAAAGAGGCAGCAGCAAAGGCTTAATTTTCTTATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACTATCTTCAGAAACTTTACCCAAGGAAGATGAAGATGCAGATGATCAAGATGCACTGATCGACTCTTCAGATTCTAGGCCCGATGAGGAGGAAGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCACAAGAAGCAGTTTCTAAGCAGAGAATGTTGACAAGTGCTTTTGACACTGAATGCTTGAGGCTGCGCCAAGCTGGTGAAACTGATTCTCTTCCACCAGATGTTGCTGGAGCGAGTAATATTGATTTGCAAACTCCCTCCACCATGCCAGTGGCATCCACAGTTCGGACACCTGAATTGTTTAAAGGGGTTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTCGTTAATTGTTATGAGCAGGGTTTGAATGGTATTCTAGCGGATGAGATGGGACTTGGAAAGACCATTCAGGCCATGGCTTTTTTGGCCCATTTAGCTGAGGAAAAAAATATATGGGGGCCTTTTCTTGTTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCAGAACTGAAAAGACTTCCATATTGGGGTGGGCTTTCAGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTGTTAGTAGCCGATGAGAAGTATTTTCGTCGCGTGAAATGGCAGTATATGGTTTTAGATGAAGCTCAGGCAATCAAAAGTTCAACCAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTACTGCTGACTGGCACACCCATTCAGAATAATATGGCTGAGTTATGGGCTCTTCTTCACTTCATCATGCCAACATTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCTAAAGGAATTGAGAATCATGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAAAAGGATGTGATTTCTGAGCTTACTACAAAAACTGAGGTTACTGTGCATTGTAAGCTGAGTTCTCGACAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTACTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTCGAAAGGAGTGAGGGAAGCACATACCTTTACTTTGGAGAGATTCCGAATTCCCTTCCACCTCCTCCATTTGGGGAGATGGAGGATGTATATTATTCTGGTGGTCACAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGAAATTATACAAAGTTCTGAAACTCTCAGCTCAGCTGTTGGTCGTGGTGTCTCCAGAGAATGTTTTCAGAAACATTTTAATATTTTTAGACCAGAAAATGTTTATCGATCTGTCTTCTCAGAAGATATGTACATTAAAAGTGGAAATTTTGGTTTTACCCATTTGATGGATTTGTCTCCACAAGAGGTGACATTTTTGGCTACTGGTTCTTTTATGGAGCGACTATTATTTTCTATGATGAGATGGGAACAAAAATTCATTGATGAAGCAGTAGACTTTCTAATGGAGACCATAGATGATGATCCAGAATGTAGTTACCTTGAGAAAGAAAAAGTGAGAACAGTTACGCGAATGTTATTGGTGCCATCGAGATCTGAGACCCAGTTTCTTCAAAAAAGATTGCAAACTGGGCCCAGCCACGCTCCTTTTGAGGCCTTGGTTGTCCCACATCAAGATAGGGTGTTATCAAATGCTAGGCTTCTTCACTCTGCTTACACATATATCCCACAAAGTAGAGCTCCCCCAATTGGTGCTCACTGCTCAGATAGAAACTTCTACTATAAAATGATTGAAGAGTTACATGATCCCTGGGTTAAGAGGTTGTTTGTGGGATTTGCACGTACATCTGATTATAATGGGCCAAGAAAGCCAGATGGTCCTCATCATTTAATTCAAGAGATAGATTCTGAACTACCTGTTTCTCAGCCTGCTCTTCAGTTAACACACAGTATTTTTGGGTCTTCTCCACCTATGCGGAATTTTGACCCTGCAAAATTGCTCACTGACTCTGGAAAGCTCCAAACACTCGATATATTATTGAAACGGTTACGAGCAGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTACATGAATTATAGAAAATATAGATATTTTAGACTTGATGGATCATCTACTATTCAGGACCGCAGAGACATGGTCAGAGACTTTCAGCATAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCTAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTCGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTAGATGATGTTCAGTTGGAGCAGAAATTAAAGGAAATCCCTCTCCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTATGAGGGGTATTCGGGTAAATGAAGATGGTGATGCATCGATGGAAGATCTAACAAGCTCTGTAGCCCAGGGTACTTCAGATTATGATCTTTCCGTGGATCCAGAGGGTTCAAAGTCCAGTAATAAAAAGAGAAAAGCTGCCTCAGATAAGCCAACTTCGAGGCCAAAGAATTCTCAAAAGATGAGTGAATTTAGTACTACGCCTATGGACGGCGAATTGGATGATGTTGATCCAGTGGGTCAGAAACCCAAGAGACCAAAGAGGGTAAAGAAGAATGTGAATGAAAAGTTTGAAGATGCTTTTACTGGGACTGCTACCCTGGTCCCAGACCAGACCCAATTTCCACCTCCACGTGATTTTAGTGCCGGAGGTTCTAAAGCAGAATCAGGCCAAGACAACTGA 4632 0.4218 MDHRPKSKDSLSYSTLFNLEPLMNFQLPEQDDDFDYYGNSSQDESRDSQVGGGIANLSNGNVHGREVNLLKRRWSQNSDNEEKSGFYGTHMTEERYRSMLGEHIQKYKRRFKGTLSSPAQNQAAVPLVKSNTGLKARKSGNERRGGSHVAETTSEWMNDSGSQKPGNYRDADFSPQYGTDRIMYEPASLDIGDGIIYKIPPIYDKLAGALNLPSFSDIHVEDFYLKGTLDLGSLAEMMAADNRFGNRNRAGMGEAIPQFESLQARLKAMSASNSAHKFSLKMSDVDLNSSIPEGAAGSIRRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERCGKIWVNIVRRDIPKHHRNFTTFHRKQLIDAKRVSETCQREAWPYFPPLIHFLSVRMKVSRSLKWTRTAGMRTRKLARDMLLFWKRIDKEMTEVRRREEKEAAEALRREQEIREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSETLPKEDEDADDQDALIDSSDSRPDEEEDPEEAELKKEALKAAQEAVSKQRMLTSAFDTECLRLRQAGETDSLPPDVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLTELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGEMEDVYYSGGHNPISYEIPKLVYQEIIQSSETLSSAVGRGVSRECFQKHFNIFRPENVYRSVFSEDMYIKSGNFGFTHLMDLSPQEVTFLATGSFMERLLFSMMRWEQKFIDEAVDFLMETIDDDPECSYLEKEKVRTVTRMLLVPSRSETQFLQKRLQTGPSHAPFEALVVPHQDRVLSNARLLHSAYTYIPQSRAPPIGAHCSDRNFYYKMIEELHDPWVKRLFVGFARTSDYNGPRKPDGPHHLIQEIDSELPVSQPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKKKQPMRGIRVNEDGDASMEDLTSSVAQGTSDYDLSVDPEGSKSSNKKRKAASDKPTSRPKNSQKMSEFSTTPMDGELDDVDPVGQKPKRPKRVKKNVNEKFEDAFTGTATLVPDQTQFPPPRDFSAGGSKAESGQDN 1543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo28g00003 1543 PANTHER HELICASE SRCAP-RELATED 94 535 - -
Pumo28g00003 1543 MobiDBLite consensus disorder prediction 1401 1543 - -
Pumo28g00003 1543 Gene3D - 599 840 IPR038718 -
Pumo28g00003 1543 MobiDBLite consensus disorder prediction 1423 1445 - -
Pumo28g00003 1543 Pfam DNA-binding domain 350 492 IPR020838 GO:0003677
Pumo28g00003 1543 MobiDBLite consensus disorder prediction 1462 1476 - -
Pumo28g00003 1543 ProSiteProfiles DBINO domain profile. 355 493 IPR020838 GO:0003677
Pumo28g00003 1543 Coils Coil 440 479 - -
Pumo28g00003 1543 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1221 1405 IPR001650 -
Pumo28g00003 1543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 833 1398 IPR027417 -
Pumo28g00003 1543 MobiDBLite consensus disorder prediction 500 533 - -
Pumo28g00003 1543 MobiDBLite consensus disorder prediction 128 172 - -
Pumo28g00003 1543 FunFam DNA helicase INO80-like protein 1189 1441 - -
Pumo28g00003 1543 FunFam Putative DNA helicase INO80 575 853 - -
Pumo28g00003 1543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 587 831 IPR027417 -
Pumo28g00003 1543 Gene3D - 1188 1434 IPR027417 -
Pumo28g00003 1543 MobiDBLite consensus disorder prediction 1401 1422 - -
Pumo28g00003 1543 MobiDBLite consensus disorder prediction 30 61 - -
Pumo28g00003 1543 CDD SF2_C_SNF 1209 1341 - -
Pumo28g00003 1543 Gene3D - 841 910 IPR027417 -
Pumo28g00003 1543 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 615 786 IPR014001 -
Pumo28g00003 1543 Pfam SNF2-related domain 618 905 IPR000330 GO:0005524|GO:0140658
Pumo28g00003 1543 SMART helicmild6 1247 1330 IPR001650 -
Pumo28g00003 1543 MobiDBLite consensus disorder prediction 41 56 - -
Pumo28g00003 1543 MobiDBLite consensus disorder prediction 501 529 - -
Pumo28g00003 1543 MobiDBLite consensus disorder prediction 151 169 - -
Pumo28g00003 1543 Pfam Helicase conserved C-terminal domain 1221 1330 IPR001650 -
Pumo28g00003 1543 SMART ultradead3 599 794 IPR014001 -
Pumo28g00003 1543 MobiDBLite consensus disorder prediction 1446 1461 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo28g00003 624 913 RAD5 or RAD16-like Gene Family AT5G43530 29.091 2.83e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo28g00003 SNF2_N 3.2e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo28g00003 K11665 - gmx:100780615 2832.36