Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo285g00001 ATGAAAATGATTTCATCTGCCTCCAACGGAAACAAGACGAGGGAAATGGACGGCGACCTCGCCGGCCTCGGCTACAAAGTCCGTTCATCGGAGCTGTGTCAAGTGGCTCAAAACATGGAGCGTTTAGAGAACGTGATTTCATCCACTGACATATCTCAACTCGCGTCGGACACAGTCCTCTACGATCCCTCCAACATAGGGTTAGGTTCGTGGGTGGACACCCTCCTCTCCGAGTTGGACCAAACGGCGTCGTTACCGTTACACTACGATCTCTCGTCGGAGCTACCCGATTTGGCCACGGATCCAAACCAAAACCGCCAACTAGGGATGGTAACCACCGTGGAAGAGGACTCGGGGATAAGACTAGTTCACATGCTGATGACCTGTGCGGATTCCGTGCAACGTGGCGACCTCTCATTCGCCGGCTCCCTCATCGAGAACATGCAGGCGTTGTTGGCGCACGTGAACACCACCTGCGGCATCGGGAAAGTCGCCGGCTACTTCATCGACGCCTTGCGCCGCCGCGTATTGCCGCCTCTTCAAAGCAACGCGTTCGCGACGACGTCTCCGTACGAGAACGACGTTCTCTACCACCACTACTACGAGGTTTGCCCTTACTTGAAGTTCGCGCACTTCACCGCGAACCAGGCGATCCTGGAAGCGTTCAACGGCCACGATTGCGTCCACGTCATCGACTTCAACCTGATGCAGGGGCTCCAGTGGCCAGCGCTGATACAGGCCCTGGCGCTCCGGCCGGGAGGACCGCCGCTGCTCAGGCTCACCGGCGTCGGGCCTCCCTCGGCGGGCGACCGCGACACGCTCCGCGAGATCGGAGTTAGACTCGCCGAGCTGGCGCGCTCAGTGAACGTGCGGTTCGCGTTCCGCGGCGTGGCGGCGTGGCGGCTCGAGGACGTGAAGCCGTGGATGTTACAAGTGAGTCCGAAGGAAGCAGTGGCGGTGAACTCGATCATGCAGCTGCACCGGCTTCTCGACCCGGCGAGTTCCGCCGTGGAAGAGGTTCTTCGTTGGATCCGGAGTTTGAACCCTAAAATCGTAACGGTTGTGGAACAAGAAGCCAACCACAACGGTGAAGGGTTTTTGGAGCGGTTCACGGAGGCTTTGCATTACTACTCCACCGTTTTCGACTCGCTCGACGCGTGTCCGGTCGAACCGAACAAGGCTTTCGCGGAGATGTACTTACAGAGGGAGATATGCAACGTTGTGTGCTGCGAAGGACCGGCGCGAGTCGAGCGCCACGAGCCGCTCGCTACGTGGAGGGACCGGCTCGGGAAAGCCGGCTTCAGGCCCTTGCATTTGGGTTTCAACGCCTACAAGCAAGCCAGCATGTTGTTGACTCTCTTCTCAGCCGAGGGTTTCTGCGTCGAAGAGAATCAAGGGTGTTTGACTCTGGGTTGGCATAGCCGTCCTCTAATTGCGGCTTCGGCTTGGCAAGCCGCGCCACTGAGAGACGACGAAACGCTGCGTTTCGAGCATTGA 1497 0.5865 MKMISSASNGNKTREMDGDLAGLGYKVRSSELCQVAQNMERLENVISSTDISQLASDTVLYDPSNIGLGSWVDTLLSELDQTASLPLHYDLSSELPDLATDPNQNRQLGMVTTVEEDSGIRLVHMLMTCADSVQRGDLSFAGSLIENMQALLAHVNTTCGIGKVAGYFIDALRRRVLPPLQSNAFATTSPYENDVLYHHYYEVCPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPLLRLTGVGPPSAGDRDTLREIGVRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVSPKEAVAVNSIMQLHRLLDPASSAVEEVLRWIRSLNPKIVTVVEQEANHNGEGFLERFTEALHYYSTVFDSLDACPVEPNKAFAEMYLQREICNVVCCEGPARVERHEPLATWRDRLGKAGFRPLHLGFNAYKQASMLLTLFSAEGFCVEENQGCLTLGWHSRPLIAASAWQAAPLRDDETLRFEH 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo285g00001 498 Gene3D - 15 79 IPR038088 -
Pumo285g00001 498 SMART DELLA_2 17 89 - -
Pumo285g00001 498 ProSiteProfiles GRAS family profile. 113 484 IPR005202 -
Pumo285g00001 498 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 101 480 IPR005202 -
Pumo285g00001 498 Pfam Transcriptional regulator DELLA protein N terminal 17 83 IPR021914 -
Pumo285g00001 498 Pfam GRAS domain family 122 484 IPR005202 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo285g00001 3 484 GRAS Transcription Factor Family AT1G14920 48.008 2.88e-158 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo285g00001 GRAS 8e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo285g00001 K14494 - gmx:100803245 837.025