Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo282g00001 ATGGTAAGATCAGAGGCTTATAGTGAAGAAAGTGATCAACAAGAAGTTCATGATAACTCTGGAGGGTCCAAACGATCTTATGATTGCACATTCTGTAAGAGGGACTTCAATAATGCTCGGGCTTTAGGAGGCCACATGAATATCCACAGGAAGGAAAGAACCAAGGTCAAGCAACTAGTCACACCCATTTCTTCATCACCACCCAACAACTTCACCAATGAGGAATCCATAGCCTGTCCTTTTGTTCCACAAGTTTCAAGCCAACCCTCAACCTCAAGGTTATCTCAGTCTTTGACAAGGAGCCAAGAGCTGGTGGGTGCCAATTTAAGTCTTCAAATTGGTTCAAGTCATGTGGATACTGATCAAGCTTGGAGAGGAATTGAGCAAGATGGTAAAGAGGAGGACTTAGAACTCAGGCTTGGTCATGATCCACACTCAAACTACTAA 447 0.434 MVRSEAYSEESDQQEVHDNSGGSKRSYDCTFCKRDFNNARALGGHMNIHRKERTKVKQLVTPISSSPPNNFTNEESIACPFVPQVSSQPSTSRLSQSLTRSQELVGANLSLQIGSSHVDTDQAWRGIEQDGKEEDLELRLGHDPHSNY 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo282g00001 148 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Pumo282g00001 148 MobiDBLite consensus disorder prediction 1 22 - -
Pumo282g00001 148 PANTHER OS07G0101800 PROTEIN 4 144 - -
Pumo282g00001 148 MobiDBLite consensus disorder prediction 123 148 - -
Pumo282g00001 148 MobiDBLite consensus disorder prediction 120 148 - -
Pumo282g00001 148 MobiDBLite consensus disorder prediction 1 25 - -
Pumo282g00001 148 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Pumo282g00001 148 Gene3D Classic Zinc Finger 5 76 - -
Pumo282g00001 148 SUPERFAMILY beta-beta-alpha zinc fingers 24 54 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo282g00001 20 145 C2H2 Transcription Factor Family AT3G53820 33.083 3.39e-14 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo282g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo282g00001 - - mtr:25483021 139.043