Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo281g00008 ATGGGAAGGTCACCATGCTGTGAGAAGACGGGGCTAAAGAAAGGACCATGGACACAAGAGGAAGACCAAAAGCTCATTGCTTTCATCCAAAAGCATGGCCATGGAAGCTGGCGTGCATTGCCTGCAAAAGCTGGCCTTAGAAGATGTGGAAAGAGTTGCAGACTTAGGTGGATTAATTATCTCAAACCTGACATAAAACGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAACTTCATGCCCTTCTAGGAAACAGATGGTCAATCATAGCATCTCACTTGCCTAAGAGAACCGACAACGACATCAAGAACTACTGGAACACCCACCTCAAGAAAAGGCTTGACGGAATGGGCATTGACCCCACCACCCACAAGCTAAAAATTGAGTTCCTAGTCCATTCCAAAGACGGCTCCGACCTCGGCCACATAGCTCAGTGGGAGAGCGCTCGGCTCGAAGCCGAAGCCAGACTCGTAAGAGAATCCAAACTACAAGAACAACAAAACAACCTCGGATCAACCTCTTCCTCCACACCACAACAAACCAGGCTCGTTCTCAAAAAAATCACACCCCAACAACAACAACCCTCAATACCACCATGCTTGGATGTGCTCAAAGTGTGGCAAAGTTCATGGTCAAACAACAACGACAACAACAACAAAAACTCATCACTGCCACCACTAGACAACAATAAGAAAACCATGCATGTGCATAGCATGTATGCCATGATGCTTGCCACTGATGACCTCGAGTCTCCAGCGTCCACATTGTGCTTCCCCGAGAGTGTGCAAATGAATAATAATAATAATAATAATCATAATAATAACAATAACTCAAACACTATGGTCTCAACCAACCACGTTGGGTTAATCAATGAGAACTATTTACTTCCTCCAATCACTGTTACTGTGGATGAGTTTATTACCAAAAGTTTAGGAACAACAAGCAGTGAGGGTGCAACTGCAACCGTGAATGGTGGTGGTGACAATGAGTCGTGGAGGTACTTCACCAAACACAACACTGAAGAAGAAATCGCTGAAACTGAGAAGAGAATTATGTACGACTCCATGTCATGTTTGCAGGACGATGATGACATTATGGTGGTTGTTGAAGCATCAAGAGCTGCGGGTTATGGTGGTAATAATATGGTAGGTTTCAATAACGATTTTGATTCCTACGAAGATTTTGCGCAGGAAAATTTGGAATTGAACTTCGAGTAG 1224 0.4404 MGRSPCCEKTGLKKGPWTQEEDQKLIAFIQKHGHGSWRALPAKAGLRRCGKSCRLRWINYLKPDIKRGKFSLQEEQTIIQLHALLGNRWSIIASHLPKRTDNDIKNYWNTHLKKRLDGMGIDPTTHKLKIEFLVHSKDGSDLGHIAQWESARLEAEARLVRESKLQEQQNNLGSTSSSTPQQTRLVLKKITPQQQQPSIPPCLDVLKVWQSSWSNNNDNNNKNSSLPPLDNNKKTMHVHSMYAMMLATDDLESPASTLCFPESVQMNNNNNNNHNNNNNSNTMVSTNHVGLINENYLLPPITVTVDEFITKSLGTTSSEGATATVNGGGDNESWRYFTKHNTEEEIAETEKRIMYDSMSCLQDDDDIMVVVEASRAAGYGGNNMVGFNNDFDSYEDFAQENLELNFE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo281g00008 407 CDD SANT 69 112 IPR001005 -
Pumo281g00008 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo281g00008 407 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo281g00008 407 CDD SANT 16 61 IPR001005 -
Pumo281g00008 407 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo281g00008 407 Gene3D - 69 116 - -
Pumo281g00008 407 FunFam MYB-related transcription factor 13 66 - -
Pumo281g00008 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo281g00008 407 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo281g00008 407 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo281g00008 407 SMART sant 13 63 IPR001005 -
Pumo281g00008 407 SMART sant 66 114 IPR001005 -
Pumo281g00008 407 FunFam MYB transcription factor 69 116 - -
Pumo281g00008 407 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo281g00008 407 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 255 - -
Pumo281g00008 407 Gene3D - 13 66 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo281g00008 1 191 MYB Transcription Factor Family AT3G01140 72.222 1.03e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo281g00008 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo281g00008 K09422 - gmx:100792994 596.66