Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo275g00005 ATGGCATGTGAGAGAGTTGATATCAATGTTTTGGTTGTTGATAATGATGATACTTCTTTGGCCCTTGTTGCTAATATACTCAACTCATTGGGATACAAAGTTCTCACTGCCAACAGCGCCCTAAATGCTTTGGAGATTCTTAGAGAGTCTGAAGGCTTTATTGATCTCGTCATTACAGAACTTCATATATCTGGGATGAATGGATTTGAATTTCAAAACTCTGTTCAAAATGAATTCCACACACCAGTGATAATTATTTCTGCAGATGCAAGAAATAGTGTAATTTCCAAGAGTTTAGCAAATGGTGCAATACACTATATTTTGAAACCCTTTTGTGCAGACGACTTCAAAGACATTTCGCAGTATGCTATGGCTGCAAGGAATAGGAAACTAACTACTAATGAAAATATTGAAGGGGAGTCAATACCAAGTGATAACATTTCTATTCAGGATGATAACTCTGCAACATCATCGAATGTGAACAACAGAAAAAGGATACATTGCCAAAGTGAAGAAAGATCTCGGCTGGTAAAGAAACCAAAGGTTGTTTGGACAGAAGATCTTCACAACCGCTTTCTGCTTGCCATAAAACAAGTTGGAATGGAGAAGGCTGTGCCAGCGGCAATTCTTGAAGTCATGAACGAGCCAAACTTGACAAGAGAAAATGTTGCCAGCCACTTACAGAAGTATCGCATGTTCCTGAGAAAAGCTGCAGAGAAAGGAATGCTTGAGGGCTTATCTGACAGGGATCTGAGGTCAAGGTTTGCCTCTGGCCTTTCAGAATCAATGATCAAAGACTTCCAAGCAATAGCTGCGAAATGGCGTGTTCCTGTGAAGCAAACAGGGTATGGAGGGACATCCAATGCTGTTAATCCTTACAGCCATGTTTCAAGAAGTACTAATTATGTGACTAATAATACTCCACTTGGAAGATGCCATCAATTTCCCCAACCATCACACATGGGCTTGAATATGATGCTTCAAAACCAGCATGGTAATGGTAATTCTTTGAATCAAGCAAGACTTGGAGTACAATCAAGCATTGGAACCAATGCTCGGGTCAACAATATCCAGCAAAAAATGTTGGGAAGCTATGCAAACCAACCATATTATGCAAAAAGCTCCTACAACAATGCCAGTGCTGTCTTACCATCAGGTGGATTAATGAGGCATGGCTTGACGACTTTTGCAAATGGCCTAAGATTAGGTGTGAACTATGGTGACAATCAATTGATAGTTTAG 1242 0.4002 MACERVDINVLVVDNDDTSLALVANILNSLGYKVLTANSALNALEILRESEGFIDLVITELHISGMNGFEFQNSVQNEFHTPVIIISADARNSVISKSLANGAIHYILKPFCADDFKDISQYAMAARNRKLTTNENIEGESIPSDNISIQDDNSATSSNVNNRKRIHCQSEERSRLVKKPKVVWTEDLHNRFLLAIKQVGMEKAVPAAILEVMNEPNLTRENVASHLQKYRMFLRKAAEKGMLEGLSDRDLRSRFASGLSESMIKDFQAIAAKWRVPVKQTGYGGTSNAVNPYSHVSRSTNYVTNNTPLGRCHQFPQPSHMGLNMMLQNQHGNGNSLNQARLGVQSSIGTNARVNNIQQKMLGSYANQPYYAKSSYNNASAVLPSGGLMRHGLTTFANGLRLGVNYGDNQLIV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo275g00005 413 CDD REC_typeB_ARR-like 10 123 - -
Pumo275g00005 413 ProSiteProfiles Response regulatory domain profile. 9 124 IPR001789 GO:0000160
Pumo275g00005 413 Pfam Response regulator receiver domain 10 117 IPR001789 GO:0000160
Pumo275g00005 413 FunFam Two-component response regulator 175 238 - -
Pumo275g00005 413 SUPERFAMILY CheY-like 8 128 IPR011006 -
Pumo275g00005 413 MobiDBLite consensus disorder prediction 138 162 - -
Pumo275g00005 413 NCBIfam myb-like DNA-binding domain, SHAQKYF class 179 232 IPR006447 GO:0003677
Pumo275g00005 413 Gene3D - 7 140 - -
Pumo275g00005 413 SUPERFAMILY Homeodomain-like 177 236 IPR009057 -
Pumo275g00005 413 Pfam Myb-like DNA-binding domain 182 231 IPR001005 -
Pumo275g00005 413 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 314 IPR045279 GO:0009736
Pumo275g00005 413 Gene3D - 176 237 - -
Pumo275g00005 413 SMART REC_2 8 120 IPR001789 GO:0000160
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo275g00005 6 274 Response Regulator Gene Family AT5G07210 35.294 2.75e-45 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo275g00005 Response_reg 2.8e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo275g00005 - K14491 gmx:102662017 536.954