Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo271g00024 ATGAGCAGCTTAAGGCCCGAATTGCATGTTGCACAACAACTTCGGCGCGACAAACTGAGGATCCAAAACAACAGTTCCCAACACTTGCAAGAGTTCCCCAACAACCTAGAACAGTTATCATTACTCACAGGTTTCAACTTGGATCTCCTTCAAGTAAGAAACGTTCGAAATAATGGCAACATGCTTGACGAAGCTGCAGCACTTTATTCATCGGAAATGATCACTTTTTCAACCCCTTCGAACCCTTTATCCGCTCATAGAAACCCTTTGGAGTGTCAAGAGCTTATGATGGCTCAGTATGGTTCAACTTCGTTTCCTCATTCATCATCCCCAAAAGACCAACAACTATGTGAACCACGCAACTTGGGTGCTAATTGGATGGTGAATTACAACGAAAGCAACCCCAACAACAACAACACTTTCTTCCCTTCCGAGCTCAATAACAATGCTTCTGGTGAAATGCATTACCATAATGCTTTGCAGGACATGGCTTATGGCGTTTGGGGAGGGAATACTCATGGTGAGGCTGTGCTTCATTATGGAAACCAAGCAAACAACGAGTTACGTTTTGGGGGTGCTAATTTATGGACAAATAATAATAATAGTCCATTGGGTTTCAAGAAGATTAATGAACAGTTGCAGGACACAAATCATCCTCATCAGGGTCTGTCATTGTCACTCTCATCAAACTCACAACAATCCAAGCCTTGTTTTGAAGAAGGGTCTGCATCAGACGACCCTCAATACAATTCAAAGTCTGTGAAATCCTCCTCCACCATGAAGCTGAATGTGCTCTCAAACAACAACAACAACAACACTGTTGTTTATCGAAATGTTGGCCCTCTTGGTCCTTTCACCGGGTACGCCACGATTTTGAAGAGTTCAAGGTTCTTGAGGCCGTGCCAACAGCTGTTAGATGAGTGGTGCTGTCAATCGGGTTCAAAATTTTCCAAGGGAGGGGTTTGTGATGTTCCAGAGTGGGTCTCTCGAGATGTCAGTGCTGCTTCTACTTCTGCTACTGCTGGTGATGCTCTTAATGTTGATGAAAGTGCTGCAAAAGGTGGTGGCAATTCGGGTGCTTCATGCTCTGTGTTGTATATTTCAAACGAAAATAATAATAATAATAATACTTCTAATAGCGCTGATGGCGGAGCCGCGAGTAGCTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGAGGAGGTTACTAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTCAATCGTTCGAATCGGTGGCGGGTCTAAGTTCGGCTACCCCTTATGTCTCCTTGGCTCTCAAGTCAGTTTCAAAACACTTCAGGTGCCTAAAAAATGCAATCTCAGATCAACTGAAGCTTACATGTGAAGTCTTGGGAGAGGACTTCTCAATACCAACCACAAGTACTATTAGTAAATTCGACAATAATATGGCCAGGCTAAGGTGCATGGACCAAAGCTTTCAAAAAAACAAATCTGGCGGGGCTAACATAAACTTTCTTGAGCCCCAACAACACGTATGGAGGCCCCAGAGAGGCTTACCAGAACGCTCAGTGGCAATTCTTAAAGCTTGGCTGTTTGAGCATTTCCTTCATCCATACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACGGGTCTATCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGGGTCCGAGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGTGCACCAGAAGCCCACCAAACCTCAAGTAAAAATGACCAGGGAGCTTCTGCCTCTGAAGGAAGTAACAACCAGCCCAAATCTGACAACCAACCTCTAAGCAGGTTTGGCACGCATGCATCATCACACGCAATCCCTGAAAAGCAATTTCAGTGTTTGGAAATGGGGTCATCCTCCTCTGCAGGCAACGAGGAACAACACATTGGAATGGAGGAAGACCAATGGAGTCAAGAGAAGAGGTCGAAACTGGAATGCCAGATTGCTACCACACCAAGCATGGATGGGACAGTGATGGGTTTTATGCCATACCGTAGAGGTGGACTTGAGGGTCTTGGATCTGTGTCACTCACTCTTGGTCTTAGGCATGGTGTTGAAGGTGTGCAACAACAACAACAACTACAGCAAGAGGAGGGGCTTAGGCGTCAGTTTGGAGGGCATATGATTCATGACTTTGTGGGCTAG 2235 0.4497 MSSLRPELHVAQQLRRDKLRIQNNSSQHLQEFPNNLEQLSLLTGFNLDLLQVRNVRNNGNMLDEAAALYSSEMITFSTPSNPLSAHRNPLECQELMMAQYGSTSFPHSSSPKDQQLCEPRNLGANWMVNYNESNPNNNNTFFPSELNNNASGEMHYHNALQDMAYGVWGGNTHGEAVLHYGNQANNELRFGGANLWTNNNNSPLGFKKINEQLQDTNHPHQGLSLSLSSNSQQSKPCFEEGSASDDPQYNSKSVKSSSTMKLNVLSNNNNNNTVVYRNVGPLGPFTGYATILKSSRFLRPCQQLLDEWCCQSGSKFSKGGVCDVPEWVSRDVSAASTSATAGDALNVDESAAKGGGNSGASCSVLYISNENNNNNNTSNSADGGAASSFCLSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSSATPYVSLALKSVSKHFRCLKNAISDQLKLTCEVLGEDFSIPTTSTISKFDNNMARLRCMDQSFQKNKSGGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGAPEAHQTSSKNDQGASASEGSNNQPKSDNQPLSRFGTHASSHAIPEKQFQCLEMGSSSSAGNEEQHIGMEEDQWSQEKRSKLECQIATTPSMDGTVMGFMPYRRGGLEGLGSVSLTLGLRHGVEGVQQQQQLQQEEGLRRQFGGHMIHDFVG 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo271g00024 744 Pfam Homeobox KN domain 537 576 IPR008422 GO:0003677|GO:0006355
Pumo271g00024 744 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 204 608 - -
Pumo271g00024 744 MobiDBLite consensus disorder prediction 594 629 - -
Pumo271g00024 744 MobiDBLite consensus disorder prediction 591 629 - -
Pumo271g00024 744 SMART prehox3 286 462 IPR006563 -
Pumo271g00024 744 Gene3D - 523 585 - -
Pumo271g00024 744 SMART HOX_1 520 584 IPR001356 GO:0003677
Pumo271g00024 744 Pfam Associated with HOX 291 461 IPR006563 -
Pumo271g00024 744 MobiDBLite consensus disorder prediction 216 256 - -
Pumo271g00024 744 MobiDBLite consensus disorder prediction 647 671 - -
Pumo271g00024 744 FunFam BEL1-like homeodomain protein 9 523 585 - -
Pumo271g00024 744 ProSiteProfiles 'Homeobox' domain profile. 517 580 IPR001356 GO:0003677
Pumo271g00024 744 CDD homeodomain 520 581 IPR001356 GO:0003677
Pumo271g00024 744 SUPERFAMILY Homeodomain-like 522 586 IPR009057 -
Pumo271g00024 744 MobiDBLite consensus disorder prediction 657 671 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo271g00024 369 712 Homeobox Transcription Factor Family AT4G34610 40.517 4.25e-67 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo271g00024 POX 7.3e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo271g00024 - - gmx:100793050 1159.05