Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo271g00002 ATGTGTATTCGAATCCTAGGAGCTAGTAATCGACGATATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAACAAGCAGTACCAAATACGAACTTAGAAAAATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAGCAACGGTATAATAATTCAGTATGATGATAATGCTGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATCTTTTGTGCAATCGCCCGGGAATTGAGACAGTTAAATTTTACTAAAATAGTTTCATTAGCACCCGAGCATACTCGGAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTCAACAATACTATTGTGACTGTTACAGATGTACGAGGTCGGGTGATTGCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACACGAAGGGGGACACCTTTTGCCGCTCAAACTGCAGCAGGAAATGCTATTCGAACAGTATCGGATCAAGGCATGCAACGAGCAGAAGTCATGATAAAAGGTCCTGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGTATACTATTAAATTTTATACGAGATGTAACTCCTATGCCACATAATGGATGTAGGTCTCCTAAAAAAAGACGTGTGTAA 660 0.4015 MCIRILGASNRRYAYIGDIVVAVIKQAVPNTNLEKSEVIRAVIVRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEHTRKIPKGVIHVQASFNNTIVTVTDVRGRVIAWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGCRSPKKRRV 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo271g00002 219 Gene3D Ribosomal protein L14 1 97 IPR036853 GO:0003735|GO:0005840|GO:0006412
Pumo271g00002 219 SUPERFAMILY Ribosomal protein L14 1 101 IPR036853 GO:0003735|GO:0005840|GO:0006412
Pumo271g00002 219 Gene3D Ribosomal protein S11 98 219 IPR036967 GO:0003735|GO:0005840|GO:0006412
Pumo271g00002 219 FunFam Ribosomal protein L14 35 103 - -
Pumo271g00002 219 SMART Ribosomal_L14_2 1 103 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo271g00002 219 ProSitePatterns Ribosomal protein S11 signature. 187 209 IPR018102 -
Pumo271g00002 219 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 108 217 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo271g00002 219 NCBIfam 50S ribosomal protein L14 1 101 IPR005745 GO:0003735|GO:0006412|GO:0015934
Pumo271g00002 219 ProSitePatterns Ribosomal protein L14 signature. 41 67 IPR019972 -
Pumo271g00002 219 FunFam 30S ribosomal protein S11, chloroplastic 93 219 - -
Pumo271g00002 219 SUPERFAMILY Translational machinery components 104 219 - -
Pumo271g00002 219 Hamap 30S ribosomal protein S11 [rpsK]. 85 219 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo271g00002 219 NCBIfam 30S ribosomal protein S11 103 216 IPR019981 GO:0003735|GO:0005840|GO:0006412
Pumo271g00002 219 Hamap 50S ribosomal protein L14 [rplN]. 2 106 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo271g00002 219 Pfam Ribosomal protein L14p/L23e 1 101 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo271g00002 219 Pfam Ribosomal protein S11 109 218 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo271g00002 109 209 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 37.273 1.02e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo271g00002 K02948 - gmx:3989330 238.81