Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo268g00007 ATGCTTTACCAAACTCACCATCCTCCTCCACTCTTTCAATTTCATCCCTTCACTTCTTCCACCACCCCTCACCTTTCCACAATACCATCATCATCTCTACCTTCTCTTCTTCTCTCTCAGGCGGAAAAGGAAATGGAGTGTCTGGAAGCAGCGTTGAAGAGCAGTTTTAGGAAAGACATGGCTCTCAAACTCAGCCCCCAAACGTTCCTAGAGGACTTGTCCGCGTTTACCGTTCAAAACGTCGTCGCTTCTTCCGACGACTTCTTCGTTGACGACCTCCTCGACTTTTCACTCCTCGAAAACAACGAAGAACCCGACCAACACAACAACCACGACTCAACCTCTGTTTCCCCTCACAAGGACAAAAATTACAATTACAATTACAACCCCTCCTTCAACAACGACAACAATTTCAACAGCGAACTCACTGTTCCGGCGGAGGAAGAAGTTGCGGACTTGGAATGGTTGTCTAATTTCGTGGAAGATTCTTTCACGGAATACTCTCTTCCCTTCCCCGCAACGGTAACGGAGAAAGCAGCACCGGAGCCGGGAAATACCGGTTTTACTTTTAAAACCCCGGTTCCGGCGAAGGCGAGAAGCAAGCGAGCGCGAACCGGTGTCCGGGTTTGGCCACTCAAGTCACCCTCTTTCACCGCCACGTCATCAACCTCGACAACAACAACAACCTCGTCCTCTTCCTCGTCCTCGCCCTCGCCCTCGAGCCCGATGCTAATATGCGCCGCGGCGACAAGAGACCTCGACGCGGAGGAGAAGAGGGTGAAGAAACGCGCCGCGGTTGACGGCGGTGCGGCGCGGCGGTGCAGCCATTGCGGCGTTCAGAAAACCCCCCAGTGGCGAACCGGACCGCTCGGGGCGAAGACTCTGTGCAACGCGTGTGGGGTCCGCTACAAGTCGGGTCGGTTATTGCCCGAATATAGACCCGCGTGTAGCCCTACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTCTGGAGATGCGGCGGAATAAAGAGGTCGTCGCTGAACCGGACATCGGTTCGCCACCGTCAGTTTCCGGTTTTTGA 1071 0.5415 MLYQTHHPPPLFQFHPFTSSTTPHLSTIPSSSLPSLLLSQAEKEMECLEAALKSSFRKDMALKLSPQTFLEDLSAFTVQNVVASSDDFFVDDLLDFSLLENNEEPDQHNNHDSTSVSPHKDKNYNYNYNPSFNNDNNFNSELTVPAEEEVADLEWLSNFVEDSFTEYSLPFPATVTEKAAPEPGNTGFTFKTPVPAKARSKRARTGVRVWPLKSPSFTATSSTSTTTTTSSSSSSSPSPSSPMLICAAATRDLDAEEKRVKKRAAVDGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRNKEVVAEPDIGSPPSVSGF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo268g00007 356 MobiDBLite consensus disorder prediction 102 126 - -
Pumo268g00007 356 CDD ZnF_GATA 273 321 IPR000679 GO:0006355|GO:0043565
Pumo268g00007 356 Pfam GATA zinc finger 274 308 IPR000679 GO:0006355|GO:0043565
Pumo268g00007 356 MobiDBLite consensus disorder prediction 102 118 - -
Pumo268g00007 356 MobiDBLite consensus disorder prediction 214 243 - -
Pumo268g00007 356 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 266 330 - -
Pumo268g00007 356 ProSiteProfiles GATA-type zinc finger domain profile. 268 304 IPR000679 GO:0006355|GO:0043565
Pumo268g00007 356 MobiDBLite consensus disorder prediction 178 243 - -
Pumo268g00007 356 ProSitePatterns GATA-type zinc finger domain. 274 299 IPR000679 GO:0006355|GO:0043565
Pumo268g00007 356 PANTHER GATA TRANSCRIPTION FACTOR 83 349 - -
Pumo268g00007 356 Coils Coil 38 58 - -
Pumo268g00007 356 FunFam GATA transcription factor 264 348 - -
Pumo268g00007 356 Gene3D - 267 341 IPR013088 GO:0006355|GO:0008270
Pumo268g00007 356 SMART GATA_3 268 322 IPR000679 GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo268g00007 49 356 C2C2-Gata Transcription Factor Family AT5G66320 50.588 9.66e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo268g00007 GATA 5.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo268g00007 - - pvu:PHAVU_003G258900g 424.861