Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo267g00005 | ATGGAAGCCATTGGTTCTGTGGATGACCTCTTGAATTTTTCATCAGACATAGGTGAGGAAGATGATGATGACGACAAACCTAGGAAAGCCTGTCCTTCACTTAAATCAAAATGCGGCGATCCATCATTGTTTAAGCCATTGGACCCGGATGATCCAAACCATTCATTTTCTGAATTTGCAGAAGAGGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCTTCAGTTGAAACATTTGTTGACCTATCATCTATTCAACCTGACACAACCAAGAACCAAAAAACAGCCCTAGTACTTGAGTACAGCACAGGCAGTAGCAACAGTAATAACAGCACTAACAGTATTTCCCTCCTAAACAGCTGCGATCACCTTAAGGTCCCAGTCCGTGCACGGAGCAAGAGTCGCAGTAGGCGTCGCCCTGGCCTTGCTGAGAACTCCAGTCAGCAAGTCTGGTGGAGACAACCAAGTAATGAAACTAACAAAGCAGATGAAGGGATGAAAATCTCACCCATTGGGAGGAAATGCCAGCACTGTGGAGCTGAAAAAACTCCACAATGGCGGGCAGGTCCCCTTGGGCCGAAAACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGGCGACTTGTGCCTGAATACCGTCCTGCAAGTAGCCCAACTTTTCATAGTGATTTACACTCTAATTCCCACAGGAAGATAGTAGAGATGAGGAAGCAGAAGCAAATGGGAATGGGATAA | 738 | 0.4553 | MEAIGSVDDLLNFSSDIGEEDDDDDKPRKACPSLKSKCGDPSLFKPLDPDDPNHSFSEFAEEELEWLSNKDAFPSVETFVDLSSIQPDTTKNQKTALVLEYSTGSSNSNNSTNSISLLNSCDHLKVPVRARSKSRSRRRPGLAENSSQQVWWRQPSNETNKADEGMKISPIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFHSDLHSNSHRKIVEMRKQKQMGMG | 245 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo267g00005 | 245 | MobiDBLite | consensus disorder prediction | 141 | 163 | - | - | |
| Pumo267g00005 | 245 | FunFam | GATA transcription factor | 164 | 244 | - | - | |
| Pumo267g00005 | 245 | ProSitePatterns | GATA-type zinc finger domain. | 175 | 200 | IPR000679 | GO:0006355|GO:0043565 | |
| Pumo267g00005 | 245 | SMART | GATA_3 | 169 | 219 | IPR000679 | GO:0006355|GO:0043565 | |
| Pumo267g00005 | 245 | CDD | ZnF_GATA | 174 | 221 | IPR000679 | GO:0006355|GO:0043565 | |
| Pumo267g00005 | 245 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 171 | 232 | - | - | |
| Pumo267g00005 | 245 | Gene3D | - | 171 | 242 | IPR013088 | GO:0006355|GO:0008270 | |
| Pumo267g00005 | 245 | PANTHER | GATA TRANSCRIPTION FACTOR | 46 | 241 | - | - | |
| Pumo267g00005 | 245 | MobiDBLite | consensus disorder prediction | 129 | 165 | - | - | |
| Pumo267g00005 | 245 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| Pumo267g00005 | 245 | Pfam | GATA zinc finger | 175 | 208 | IPR000679 | GO:0006355|GO:0043565 | |
| Pumo267g00005 | 245 | ProSiteProfiles | GATA-type zinc finger domain profile. | 169 | 205 | IPR000679 | GO:0006355|GO:0043565 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo267g00005 | 1 | 245 | C2C2-Gata Transcription Factor Family | AT3G24050 | 43.478 | 1.11e-50 | 165 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2C2-GATA | Pumo267g00005 | GATA | 8.5e-17 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo267g00005 | - | - | gmx:100784527 | 415.616 |