Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo262g00003 ATGAGCATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCAACCCCTGCTTCTTCCCTTCACCACCAAGGCCAACAACCCATTTCAGAAAACCACATTCCAAACCTTCCTCTGCCTTCTTCAGCTTCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCCACACCATGTGTGCCACACCCTCAACAAAACAATGAGGTTCAAGAGTGTGGTGGTGGAAGTGGTGGTGGTGCCAACACCAACACTAACACCACCACTAACTATTGGAACCTCAGGATGTGCCCAGAAGTGATGAATCCTCCAAAGAAAGGTGTGATCAACGTGGATGGTGATGATGATGATGAAAAAGGTGTGATGGAGAGTGAGGAAAACGGGGTCTATGGGCCTGACTTTAGGGTGTGCCAAGATTGTGGCAACAGGGCTAAGAAAGATTGCATCTTTAGAAGATGCAGGACTTGCTGCAAGGGACGTGGGTATGATTGCAACACTCACGTGAAGAGCACGTGGGTCTCCTCGGTTCGCCGCCGGGAGCGAGAGATCGTGATGGCTGCCGGCGGCGGCGGTAGTGGTAGTAATGGTGGTGGCAGTAGTGGTAAGAGGCCAAGAGCTATAGTGGGGTCATCACAAAATGCCACTGCCACTTCTCATAGTTCCAACTCTAATGCTACAACACCTAAGAGCTTAGCTACTGGCTCTTTTCACCAAGATGCTAGTTTCAAGCAATCTTTACCGGGTCATGTTCGTGCACCTGCGGTGTTCAAGTGCCATAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCATACTTGGCCACGGTCCATATTAGTGGCCATGTGTTCAAAGGGTTTCTCTATGACCACGGTGTTGATGGGAAAACCGCAAATGCAGTGCCTTGTGTTTCGGAACTGCAACTTGGAAACAATTGCAGAGGCAAGAACAGGGAATGTTCCTCTGCAATTGGGGTCTCAAATAACAATGCATCATACCCTGCTTCTGCCAGTTGA 1014 0.4941 MSMLGLRDLVLIAPTPASSLHHQGQQPISENHIPNLPLPSSASLSVGFGIFPLLTATPCVPHPQQNNEVQECGGGSGGGANTNTNTTTNYWNLRMCPEVMNPPKKGVINVDGDDDDEKGVMESEENGVYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCNTHVKSTWVSSVRRREREIVMAAGGGGSGSNGGGSSGKRPRAIVGSSQNATATSHSSNSNATTPKSLATGSFHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKTANAVPCVSELQLGNNCRGKNRECSSAIGVSNNNASYPASAS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo262g00003 337 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 89 330 IPR007818 GO:0003700|GO:0006355
Pumo262g00003 337 NCBIfam LRP1 C-terminal domain 245 292 IPR006511 -
Pumo262g00003 337 Pfam Domain of unknown function (DUF702) 135 293 - -
Pumo262g00003 337 NCBIfam putative zinc finger domain, LRP1 type 135 177 IPR006510 -
Pumo262g00003 337 MobiDBLite consensus disorder prediction 184 231 - -
Pumo262g00003 337 MobiDBLite consensus disorder prediction 192 231 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo262g00003 1 332 C2H2 Transcription Factor Family AT5G12330 41.420 3.75e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pumo262g00003 DUF702 2.5e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo262g00003 - - gmx:100806835 508.834