Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo261g00008 ATGCGCGGAGAGGTACGATGGACCCAACCTAACATGCCAAATGGAAGAAGCTATACTGCATTGTATGCCTGCACTATTAGTTCATCGGGTACTTTGCTTGGGGGGAGACTGCAAGATGGACAAGAAATAGCAGTTAAAAGACTTTCTAGAGCCTCTGGACAAGGTTTTGAAGAATTCATGAATGAAGTTGTGGTGATTTCCAAGCTTCAACACCGCAATCTTGTAAGACTTTTTGGCTGCTGTGTTGAAGGTGATGAAAAGATGTTGATATACGAATACATGCCAAACAAAAGTTTGGATGCATTTATCTTTGTGGGTGAGAGGGAATATGTGTATTTGGTTGGAGAAAGGGTAATGCTGTTTGGAGCCAGCAACACCTACTCCAGTGACAACGTAATGCAGATTACAGTGGCATTCAACCACTTTGGTCAGGGGCTGATCCAAAGAATGCCTAGATGCAGATGGGGTTTTGTCCATGTGATAAACAATGACTACATGCACTGGCTGATGTATGCAATTGGTGGTAGTTCAGGGCCAACAATTCTGAACGATTCTGAGTCAAGAAATTTAATATGA 576 0.4253 MRGEVRWTQPNMPNGRSYTALYACTISSSGTLLGGRLQDGQEIAVKRLSRASGQGFEEFMNEVVVISKLQHRNLVRLFGCCVEGDEKMLIYEYMPNKSLDAFIFVGEREYVYLVGERVMLFGASNTYSSDNVMQITVAFNHFGQGLIQRMPRCRWGFVHVINNDYMHWLMYAIGGSSGPTILNDSESRNLI 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo261g00008 191 SUPERFAMILY Pectin lyase-like 117 182 IPR011050 -
Pumo261g00008 191 Gene3D - 108 187 IPR012334 -
Pumo261g00008 191 PRINTS Pollen allergen Amb family signature 149 168 IPR018082 -
Pumo261g00008 191 PRINTS Pollen allergen Amb family signature 171 190 IPR018082 -
Pumo261g00008 191 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 30 129 - -
Pumo261g00008 191 SUPERFAMILY Protein kinase-like (PK-like) 31 119 IPR011009 -
Pumo261g00008 191 Pfam Pectate lyase 116 184 IPR002022 -
Pumo261g00008 191 ProSiteProfiles Protein kinase domain profile. 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo261g00008 191 Gene3D Phosphorylase Kinase; domain 1 18 93 - -
Pumo261g00008 191 SMART tyrkin_6 26 170 IPR020635 GO:0004713|GO:0006468
Pumo261g00008 191 SMART amb_all 16 187 IPR002022 -
Pumo261g00008 191 FunFam Uncharacterized protein 28 93 - -
Pumo261g00008 191 Pfam Protein tyrosine and serine/threonine kinase 34 103 IPR001245 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo261g00008 118 183 Polysaccharide Lyase AT5G15110 72.727 3.97e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pumo261g00008 Pectate_lyase_4 8.2e-07 CL0268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo261g00008 - - gmx:100779455 137.887