Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo261g00004 ATGTCACAATGTTCTTCTAATCCTAAAAGCTTCAATCCCAGAAGCTATCAAAGTGAAGTTTTTGAAGTTGCAAAACTGAGGAACACCATTGCAGTGCTGGATACTGGTGCTGGAAAGACCTTGATTGCTGTTATGCTTATTAAACATATTGGCCAATTTATCAAGTCCACTGATGAAAAGAGATTGATTGTTTTCTTGGCTCCCACTGTCCATCTTTGGTCTTTCTATTTGCAGCAATTTGAGGTTATCAGGGACTACACAGATCTGGCAGTGGGAGAATACTATGGAGACAAGGGAATAGATGACTGGAATTCAAGTTGTTGGGAAAAGGAAATTGAAGAACATGATGTAATGGTCATGACACCACAAATTCTATTGGATAGCCTCAGAAAGGCATTTTTCAAGATGGAAACAGTCAGCTTGTTGGTTATTGATGAATGCCATCGTGCTAGTGGGAGCCATCCTTATGTTAAAATAATGAAGGAATATTACCACACATCTAGTAACAAGCCAAAGATTTTTGGAATGACAGCATCACCAGTAATTGGAAAGGTTGTCTCATCCACAGTGAACTGCAAGGTTCAGATATCTAGGCTTGAAAGCATTTTAGATTCTCAGATTTTTGCTATTAAAGATAGGACAGAGTTGGATCAATGTGTGCCCTATGCTACAGAAAATTGTAGGCTCTATAATCAAGCACAATTTCTCAACAATGACTTGAAATTAAAGATGGAAGATTTATGGTCTCAGTTTGATGCTTCATTGCTAAGATTGCAACAGTCAGTCGAATGTCAATACAAAGACATTGATGATACACTTGGAAAACTGCGGAAGCGATTATCGAATGACTATTCTAAGATTTTGTATTGTCTTGATGATCTTGGCCTTGTATGTGCTTGTGAGGCTGTTAAATTCTGTCTGGAGAACAGCCCTTTTGTCCATCAGGAATGTGAATTTAGTAGAGAAGGTTGTTTTCAATATGCTCGTTTCTTTAATGAATTGCTGAAACTAATTGGAGCCTATTTCAATACTGATGATACCAATTTTGGAGACTTTGGTTTTGACCTTTTAAAGGCAGTAAAATTGGGATACCTGTCTCCAAAATTACATGAACTAATACAAATATTTAAATCATTTGGAGAAAGTAATGATGTTCTGTGCCTCGTATTTGTTGAAAGAATTGTCACAGCAAAAGTCATTGACATATTTGTAAAGAAAGTTAAGTTCTTGTCCCATTTTACAGTCTCATATTTGACTGGAAGCAATACGTCTGCTGGTTCGCTATCACCAAAGGAGCAGAAAGAAATCTTGCAGCTTTTTTCCAATGGAAAGGTCAATATACTATTTGCCACTGATGTTGTTGAGGAAGGAATTCATGTACCAAATTGCTCCTGTGTAATACGTTTTGATCTGCCCAAGACAATTCGCAGTTATGTCCAATCTAGGGGACGAGCACGACAAAGTAATTCATTATTTATCATGATGCTCTACAGGGAAAATGTGAAGCAAAGGGATCAACTGTTTGATATTATTAGGAGTGAATATTCAATGACAAATACAGCAAAAAGAAGAGAAGAAGAGGCAATTACTATGGAACCTTACAGAACTGAGAAGACACATGCTTATTATGTTGATGCAACTGGTGCATGTGTCACTGCAGATTCTAGTGTCAGTCTCATCTATAGATATTGTGAAAAATTGCCCAGTGATAAATACTTTGTTCCCAAACCAATGTTCCAGCACTCGAATTCTGGTGGGCATTATGAATGCAAATTAATATTGCCTCCTACTTCACCTTTTCAAACATTAATGGGTCCTCCGAGTACAAATTCTCATTTATCAAAGCAGCTTGTATGCTTGGAGGCATGTAAGAAGCTGCATGAGATGGGTGCTCTTAATGATAATCTTCTACCCTTTTCAGAAGAGCCACCCGAAAGTAATATGAGCTTGAATTGGAAAAAGTCACCATCAGGTGAAGGAACAACCAAAAGAAAGGAATTACATGGGACAGTATGCATTCATGCACTATCTGGAGCGTGGGACTCAAGTCAAAACGGGGCCACTTTTCATGCCTATAAATTTGATTTCTCTTGTAACACTGAAGAGGTTTATTCCAGATTTGTTCTTCTGATTGGTTCAAAACTAGACAATGATGTAGGAAATATCGAGAGAGATCTTTACCTGATCTCAAAGACAGTCAAGTCCCATGTTTCTTCATGTGGAGAACTGTATTTGGATTCAGAACAGATGATGCAAGCTAAGTGCTTTCAAGAACTTTTCTTTAATGGTTTATATGGAAGACTTTTTGTTGGATCAGAAGAAGCTGGCACAAAGAGGGAGTTTTCACTTCAGAATCAAATAAGTGAGCTATGGAATCCATTAAAAATGTATCTGCTTTTGCCACTTGAGGTATTGAATAGTTCAGGTGAAGCCTGGAGAGTAAACTGGAGAGGAGTGAGCTCTTGTGTGTCAGTGGTAAATTTTTTGAAAAGAGAATTCTCATTGAGTTCTGAGAATTGTCCCAAACAAAAGTTATCAAATTGGAGTGATTCATCTGATGTGGAACAGAAGACCTCAAGTACAGTCCATTTTGCTAATTGTTTTCTTGATGTTAATGATATCAAAGATGTGGTGGTGTTGGCTATTCACACTGGAAGGTTCTACTCTGTTGTTGAAGTTGTAAAAGATTCATCTGCAGAGAGTCCTTTCAGTTACAATGGGGAAGACGTGGCTTCATCATCAGAATACAGTACCTACAATGAATACTTTAACAAAAAGTATGGGATTGTGCTAATGAATCCAGGACAGCCTTTGCTGCGGTTAAAGCAAAGTCATAACCCACATAATCTTCTAGTGAAATTCAATGGAGATGCCCCAGTTCTAAAAAGATCACAAGTCCATGCTTATATGCCACCTGAGGTTTTAATAAGAATTAATTTTACAATAGAAGTTCTGAAGTCAATTTACTTACTACCATCATTAATGTACCACTTAGAATCCTTGATGTTAGCAAGCCAGCTAAGAAAGGAGATTGATTTAGACAATGACAGATTTCAGATATCAAGTTCATTGATTCTTGAAGCATTGACGACGCTAAAATGTTGTGAAAGTTTCTCAATGGAGCGTCTAGAATTGCTTGGAGATTCTATTTTGAAGTATGCAGTGAGCTGCCACCTTTTCCTTAGATATCCAGAGAAACATGAAGGGCAATTATCTGATTGGCGTTCTGCTCTAACTTCTAATGCATCCCTGCATAGATTGGGAATAGAGTGCAAATTACAGGGATATATACGTGACAGTGCATTTGAGCCACGTCGCTGGGTAGCTCCAGGGCAGCACTGCATACACCCTGTTCCTTGTGGATGTGGGGTGGATACTTTTGAAGTACCTGTGGATAAAAAATTCCAAACTGATGACCCAAAAGTTAAGATTGGAAAGTTCTGTGACAAAGGGCATAGATGGATGTGTTCAAAAACCATAGCCGATTGTGTTGAAGCCCTCATAGGCGCTTATTATGTTGAGGGCGGGCTTACTGCTGCACTTCATGTAATGCAGTGGCTTGGAATGAATGTTGGGCATGATTCACCATTGGTACATGAAGCCATCACCAGGGCATCATTAAGGTCCTATGTCCCAAAAGCTAATGATATCAGAGCCTTGGAACTAAAGCTTGGGTATGAATTTTCCACTAAGGGTCTGCTATTGGAGGCCATGACACATTCATCTCAGCAAGAGCTGGAACCGGGAATTTGTTATTGTTACCAGAGACTTGAATTTCTAGGTGATTCAGTGTTGGGCTTTCTCATTACACGACATCTTTATGAGAGCTACCCTCATATTGATCCTGGCTTGTTAACTGATTTGCGTTCTGAAGCTGTTAGCAATGAAAACTTTGCTCAATGCTGTGTAAGAAGGAATCTTCAACCTCATCTTCAACACTGTTCCGGGATTCTTCAAAGTCAAGTAACAAAGTTCTCAAGTTCAATGGCTGAAACTAAGAACACCTCCAAATTAAGAGTAAAAGCTCCAAAGGCTCTTGGAGACATGGTGGAAAGCATTGCAGGGGCTATGCTCATTGATACCGAGCTTGTTCTTGAGAAAGTGTGGAGAATCTTTGAACCATTGTTGTCTCCAATTGTGACCCCTGATAATCTTGAACTTTCCCCCCTCTGTAAACTGAATAAATTGTGTGATTGTCTTGGCTACTTTATGAAAGAGATATCCACAAAAGAGGGGGAATTTCATCATGTTGAACTTCAATTGCAGCTGGAAGATTTCCTTTTGGTAGGAAGAGGGACTGAAAAAAGCAAAAAAAGAGCAAAAGGAGAAGCCGCACATTGTTTGTTAGAGGAACTTGAGGGAGTTGATATATGTAATCCATTAACTGATGAAGATTCTCTTAGAAACAGAAAGCAAAAGAATGGAAGTGATTGCCCAGCAGAGTCAACTGAAGATTCTTTCCCAGTCAATGACTGTTCTAAGGAAACCTACAGTATTAGTTCCACCCCACCAGCTATTGAATCAATTGACATAAAGAAAGGAGGACCACGAATGTCAATATATAGTATATGTAAGACATTACAGTGGCCACTGCCAAAATTCATTTGCAAAGAAACTAAATCCAGCACTCCAATTGAATTCGGTGAAGGCTCTGGGAAAAGAATTGGTTTCAACAGTTTTGTATCTAATATCATCTTACAGATACCCAACTCAAGCATCATTGAGTGTACAGGAGATGCCAAAGCTGACAAGAAGAGTTCATTTGACTCTGCAGCAATTGCCCTGCTTTATGAACTTGAGCAACAACAAAGGATAGTCATTGTTAAGCCTTAA 4833 0.3873 MSQCSSNPKSFNPRSYQSEVFEVAKLRNTIAVLDTGAGKTLIAVMLIKHIGQFIKSTDEKRLIVFLAPTVHLWSFYLQQFEVIRDYTDLAVGEYYGDKGIDDWNSSCWEKEIEEHDVMVMTPQILLDSLRKAFFKMETVSLLVIDECHRASGSHPYVKIMKEYYHTSSNKPKIFGMTASPVIGKVVSSTVNCKVQISRLESILDSQIFAIKDRTELDQCVPYATENCRLYNQAQFLNNDLKLKMEDLWSQFDASLLRLQQSVECQYKDIDDTLGKLRKRLSNDYSKILYCLDDLGLVCACEAVKFCLENSPFVHQECEFSREGCFQYARFFNELLKLIGAYFNTDDTNFGDFGFDLLKAVKLGYLSPKLHELIQIFKSFGESNDVLCLVFVERIVTAKVIDIFVKKVKFLSHFTVSYLTGSNTSAGSLSPKEQKEILQLFSNGKVNILFATDVVEEGIHVPNCSCVIRFDLPKTIRSYVQSRGRARQSNSLFIMMLYRENVKQRDQLFDIIRSEYSMTNTAKRREEEAITMEPYRTEKTHAYYVDATGACVTADSSVSLIYRYCEKLPSDKYFVPKPMFQHSNSGGHYECKLILPPTSPFQTLMGPPSTNSHLSKQLVCLEACKKLHEMGALNDNLLPFSEEPPESNMSLNWKKSPSGEGTTKRKELHGTVCIHALSGAWDSSQNGATFHAYKFDFSCNTEEVYSRFVLLIGSKLDNDVGNIERDLYLISKTVKSHVSSCGELYLDSEQMMQAKCFQELFFNGLYGRLFVGSEEAGTKREFSLQNQISELWNPLKMYLLLPLEVLNSSGEAWRVNWRGVSSCVSVVNFLKREFSLSSENCPKQKLSNWSDSSDVEQKTSSTVHFANCFLDVNDIKDVVVLAIHTGRFYSVVEVVKDSSAESPFSYNGEDVASSSEYSTYNEYFNKKYGIVLMNPGQPLLRLKQSHNPHNLLVKFNGDAPVLKRSQVHAYMPPEVLIRINFTIEVLKSIYLLPSLMYHLESLMLASQLRKEIDLDNDRFQISSSLILEALTTLKCCESFSMERLELLGDSILKYAVSCHLFLRYPEKHEGQLSDWRSALTSNASLHRLGIECKLQGYIRDSAFEPRRWVAPGQHCIHPVPCGCGVDTFEVPVDKKFQTDDPKVKIGKFCDKGHRWMCSKTIADCVEALIGAYYVEGGLTAALHVMQWLGMNVGHDSPLVHEAITRASLRSYVPKANDIRALELKLGYEFSTKGLLLEAMTHSSQQELEPGICYCYQRLEFLGDSVLGFLITRHLYESYPHIDPGLLTDLRSEAVSNENFAQCCVRRNLQPHLQHCSGILQSQVTKFSSSMAETKNTSKLRVKAPKALGDMVESIAGAMLIDTELVLEKVWRIFEPLLSPIVTPDNLELSPLCKLNKLCDCLGYFMKEISTKEGEFHHVELQLQLEDFLLVGRGTEKSKKRAKGEAAHCLLEELEGVDICNPLTDEDSLRNRKQKNGSDCPAESTEDSFPVNDCSKETYSISSTPPAIESIDIKKGGPRMSIYSICKTLQWPLPKFICKETKSSTPIEFGEGSGKRIGFNSFVSNIILQIPNSSIIECTGDAKADKKSSFDSAAIALLYELEQQQRIVIVKP 1610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo261g00004 1610 CDD RIBOc 1023 1187 IPR000999 GO:0004525|GO:0006396
Pumo261g00004 1610 SUPERFAMILY RNase III domain-like 1002 1192 IPR036389 GO:0004525|GO:0006396
Pumo261g00004 1610 SMART riboneu5 1023 1196 IPR000999 GO:0004525|GO:0006396
Pumo261g00004 1610 SMART riboneu5 1232 1385 IPR000999 GO:0004525|GO:0006396
Pumo261g00004 1610 FunFam Dicer-like 104 999 1188 - -
Pumo261g00004 1610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 20 198 IPR014001 -
Pumo261g00004 1610 Gene3D - 8 249 IPR027417 -
Pumo261g00004 1610 ProSiteProfiles Ribonuclease III family domain profile. 1004 1176 IPR000999 GO:0004525|GO:0006396
Pumo261g00004 1610 Gene3D - 359 522 IPR027417 -
Pumo261g00004 1610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 503 IPR027417 -
Pumo261g00004 1610 MobiDBLite consensus disorder prediction 1466 1487 - -
Pumo261g00004 1610 SUPERFAMILY RNase III domain-like 1216 1381 IPR036389 GO:0004525|GO:0006396
Pumo261g00004 1610 FunFam Endoribonuclease dicer-like 1 1211 1383 - -
Pumo261g00004 1610 ProSiteProfiles Ribonuclease III family domain profile. 1217 1362 IPR000999 GO:0004525|GO:0006396
Pumo261g00004 1610 PANTHER DICER-RELATED 27 1454 - -
Pumo261g00004 1610 SUPERFAMILY dsRNA-binding domain-like 1384 1460 - -
Pumo261g00004 1610 Pfam Helicase conserved C-terminal domain 381 485 IPR001650 -
Pumo261g00004 1610 SUPERFAMILY PAZ domain 871 976 IPR036085 GO:0005515
Pumo261g00004 1610 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 556 646 IPR005034 GO:0016891
Pumo261g00004 1610 FunFam Endoribonuclease dicer-like 1 359 522 - -
Pumo261g00004 1610 CDD RIBOc 1233 1385 IPR000999 GO:0004525|GO:0006396
Pumo261g00004 1610 SMART ultradead3 9 205 IPR014001 -
Pumo261g00004 1610 Pfam DEAD/DEAH box helicase 16 178 IPR011545 GO:0003676|GO:0005524
Pumo261g00004 1610 Gene3D - 1522 1601 - -
Pumo261g00004 1610 Gene3D paz domain 857 976 - -
Pumo261g00004 1610 FunFam Endoribonuclease dicer-like 1 551 647 - -
Pumo261g00004 1610 Pfam Ribonuclease III domain 1041 1176 IPR000999 GO:0004525|GO:0006396
Pumo261g00004 1610 Pfam Ribonuclease III domain 1255 1361 IPR000999 GO:0004525|GO:0006396
Pumo261g00004 1610 ProSitePatterns Ribonuclease III family signature. 1255 1263 IPR000999 GO:0004525|GO:0006396
Pumo261g00004 1610 SMART PAZ_2_a_3 849 1003 IPR003100 GO:0005515
Pumo261g00004 1610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 526 IPR001650 -
Pumo261g00004 1610 Pfam PAZ domain 867 1000 IPR003100 GO:0005515
Pumo261g00004 1610 Gene3D Dicer dimerisation domain 551 649 IPR038248 -
Pumo261g00004 1610 CDD DEXHc_dicer 11 212 - -
Pumo261g00004 1610 SMART helicmild6 401 488 IPR001650 -
Pumo261g00004 1610 CDD SF2_C_dicer 364 496 - -
Pumo261g00004 1610 Pfam Dicer dimerisation domain 556 642 - -
Pumo261g00004 1610 Gene3D Ribonuclease III domain 1208 1382 IPR036389 GO:0004525|GO:0006396
Pumo261g00004 1610 Gene3D Ribonuclease III domain 1005 1189 IPR036389 GO:0004525|GO:0006396
Pumo261g00004 1610 ProSiteProfiles PAZ domain profile. 873 979 IPR003100 GO:0005515
Pumo261g00004 1610 FunFam Endoribonuclease dicer-like protein 8 250 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo261g00004 384 485 Eukaryotic Initiation Factors Gene Family AT3G19760 33.010 1.46e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo261g00004 K11592 - cave:132188155 1975.29