Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo256g00003 ATGGAGAGCGACATTTCCCGGTGGTTCATGGAGTTCCTCCTCCGCAGTTCCGTCCCCGATTCCCTCCACCAAAAAACCCTAACCGCGCTCCCTCTCTCCGGCGCCGATTCCGGCCTCAAGAAAACTCTCCTCCTCCGCACCCTCCAATTCCTCGTCCACACCGCCTCCCTCTCGGAGGCCGCGCTCAACATCCTCGAACTCCTCGAAGGCCTCGACACCAACGCTCCGGCCTCCGACGCGCTCCGCCGCGCGTACTGCGCAGTCGCCGTGGAGTGCACCGTCAAGTACCTCGCCGCGTGCCCCGACGACTCCGCCGGGGAGTACGCCGGCGCCGTGCAGCGGATCTGGCGCGGCCGCGTGGCGGCGCTGGAGGCGCGCCGGAGCGGGCTGGTCTCCGGCGAGCTGGCGCGCTGGCGCGACGACGTCGAGGCCGCCGTGGGGGAATCTAGGGCTCGCGAGAGGCTCGCGGGTTTGAACAGCAGGAGGGACGCGTTGAACGAGGTGAGGGCGTATTTGAAGGAAGCGTGGGAAACGGTGGGTGTAGGTGCTCGTGATAATGATAATGATGATAGTGATGATGGTGCATGCATGGAGGATGTGGCAATGCATGATGAGAATCAGGGCAAGGAACAGATGCAAGAGAGAGTTGATACGAATCAGGAAGTGGGTGGGTGTGACTCTACTCCTCATAGAGATAAAGCAATTCAGAAGCAGAATCCTCAGCTTGAACACAGACGCTCTGCACTTCGTGCATGTCATAGGGGATTTAAAATATCTGATCCGGAGGAAGTGGAGTCAGCAAAATCATGGAGCAAACATGATCCTGTGCCTAGTGCTGAAGTTAGAAAACTTCCGGAATCCCTTAAATTACGAGTATTGGTAGATGATCCTCTTCCTGAAGCATTGCATACATCTGAAGTTGTAAGATCTAAATTGGCAACAAGTGATATAAAAATTGAGCCACCTACTGAAAACCAGAGTGAAGATGTAGATGTATCAGATCCAAATGTTTTCCAGACTATTGTACTTTTTCAGCCTAATGATGCCAATCTTGGGAAGAAGTCTTCTGTTCATTGTAGTAATATTCATCAGCCCAACTTAATGGAACGGAACAACAGAAGTGCTCGTACCATTGAGTGGGATGATTCAATAGACAACTCACCACAAGCAAGACAGCCAAGGAGGAGGAAAAGGAAATGGAGTTCATTGGAAGAGGAAACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCGTCAATCCGAAGTTTTTACAGTAACATATTTGAAAATAGAAGTGGAGTTGATCTGAAGGACAAGTGGAGAAACATGATACGGTGA 1347 0.5219 MESDISRWFMEFLLRSSVPDSLHQKTLTALPLSGADSGLKKTLLLRTLQFLVHTASLSEAALNILELLEGLDTNAPASDALRRAYCAVAVECTVKYLAACPDDSAGEYAGAVQRIWRGRVAALEARRSGLVSGELARWRDDVEAAVGESRARERLAGLNSRRDALNEVRAYLKEAWETVGVGARDNDNDDSDDGACMEDVAMHDENQGKEQMQERVDTNQEVGGCDSTPHRDKAIQKQNPQLEHRRSALRACHRGFKISDPEEVESAKSWSKHDPVPSAEVRKLPESLKLRVLVDDPLPEALHTSEVVRSKLATSDIKIEPPTENQSEDVDVSDPNVFQTIVLFQPNDANLGKKSSVHCSNIHQPNLMERNNRSARTIEWDDSIDNSPQARQPRRRKRKWSSLEEETLRAGVKMFGEGNWASIRSFYSNIFENRSGVDLKDKWRNMIR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo256g00003 448 CDD SANT_TRF 398 448 - -
Pumo256g00003 448 SMART sant 396 448 IPR001005 -
Pumo256g00003 448 SUPERFAMILY Homeodomain-like 393 447 IPR009057 -
Pumo256g00003 448 MobiDBLite consensus disorder prediction 378 400 - -
Pumo256g00003 448 Pfam Myb-like DNA-binding domain 397 446 IPR001005 -
Pumo256g00003 448 Gene3D - 388 448 - -
Pumo256g00003 448 MobiDBLite consensus disorder prediction 220 243 - -
Pumo256g00003 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 392 448 IPR017930 -
Pumo256g00003 448 ProSiteProfiles Myb-like domain profile. 392 447 IPR001005 -
Pumo256g00003 448 MobiDBLite consensus disorder prediction 226 243 - -
Pumo256g00003 448 PANTHER MYB TRANSCRIPTION FACTOR 1 448 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo256g00003 400 447 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 1.27e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo256g00003 Myb_DNA-binding 7.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo256g00003 - K11111 gmx:100791258 645.58