Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo251g00001 ATGGCCCGAGTAAAGGTGAAACTTGCATTCATAGCCAACGATACTAAAAGAAAGAAAGCATACAAGAAAAGGAAGCAGTCACTGCTGAAGAAGACGGAGGAACTCAGCACCCTTTGTGGTGTTGAAGCATGTGCTATAGTTTATGGCCCTGATGATACTCAGCCAGAAGTTTGGTCATCTAAATCGGGTGTCCAAAATGTGTTGGGAAAGTTTAGGAGTATGACTGAATGGAAGCAGCAGAGGAGAATGGGTACAAAGAAGCTCCAGAAAATTGTGAACGACAACAGGGAGAAACAGATGGCCATGTTCATGGCTCAGTGCTTTAATACAGGAAAGTTTCAGCCTAATAATACCATGACCACAGCTGATGGAAACGTTGAATCTCAACCAGGTATCGTCACCATCCCAACCCCCACAAACACCAACAACATCCCAACCGCAGATGCAAATAGCAGCACTTGA 462 0.4459 MARVKVKLAFIANDTKRKKAYKKRKQSLLKKTEELSTLCGVEACAIVYGPDDTQPEVWSSKSGVQNVLGKFRSMTEWKQQRRMGTKKLQKIVNDNREKQMAMFMAQCFNTGKFQPNNTMTTADGNVESQPGIVTIPTPTNTNNIPTADANSST 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo251g00001 153 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pumo251g00001 153 PANTHER MADS BOX PROTEIN 3 93 - -
Pumo251g00001 153 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Pumo251g00001 153 MobiDBLite consensus disorder prediction 122 153 - -
Pumo251g00001 153 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo251g00001 153 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo251g00001 153 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo251g00001 153 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo251g00001 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Pumo251g00001 153 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Pumo251g00001 153 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo251g00001 1 116 Type I MADS-box Gene Family AT5G48670 46.565 2.95e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo251g00001 SRF-TF 3.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo251g00001 - - gmx:100795996 161.77