Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo242g00004 ATGCACGGTGGTCTTCAGGATTTTCTGTCGTTGCTGTTCTCAAATATCGGCGGTGTCATGGCTTCAAGAGCGGAACAACCCATCAATGGTAAGAATAAGCAGAAGAATGTGGGTGGTGAAGGAAGAAACAGAAGGGTGCTTAATGATATTGGGAATCTTGTTGCTGCAACAAAGGTGGAAGCAGCTCAGAAGGGGTCTAACAACAAAACTTGTCAACCTCAGGCTGCTTGTGGACTCCCAAGGGATTTGCTATTCAACATTGATGAAGCTTACATGGACAATGAATTGGCAGCAGCCGAGTATATCGATGATATTTATAAATTTTACAAAGAGAACGAAGAAGATGGCTGTGTGCATGATTACATGGGTTCACAGCCTGATATTAATGCCGAGATGAGATCAATCCTTGTGGACTGGTTGATAGAAGTGCATAGAAAGCTTGAGCTCATGCCAGAAACGTTGTATTTGACTCTGAACATTGTTGATCGGTTCCTGTCTGTGAAGGCTGTGTCAAGAAGGGAACTTCAGCTGGTTGGCATCAGCTCAATGCTGATAGCCTCAAAATATGAAGAGATATGGGCACCACAGGTTAATGATTTTGTGTGCTTATCAGACAATGCTTATGTTAGTGAACAAGTGTTGATGATGGAGAAAACAATTCTTAGGAAGCTTGAATGGTGCTTAACAGTTCCAACACCCTATGTCTTTTTGGTTTGGTATATCAAAGGCTCCACTCCACCTGTCAAAGAGATGGAACACATGGCATTTTTCCTTGCTGAACTTTCTTTAATGCACTATCCTACTGCAATTTTGTACCGGCCTTCTATGATTGCTGCTTCTGCTGTATTTGTGGCTCGATGTACCCTTGGAAGGAGCCCTTTCTGGACAAGCACTTTGAAGCACTACACAGGCTACACTGAGGAGCAACTAAGCGATTGTGCCAAAATCATGGTCAACCTTCATGCTGCTGCTCCAGGAAGTAAGCTTAGGGCAGTTTACAAGAAATTTTGTGGCTCAGTCAGATCTTTGTGTTGTTGCTCTTCTTTCTCCAGTGAAGAACTTGTCAAAATTGTCTTGAACATTCTAGTTTTGGTTTGTGTGATCTTGTCATTTGTTAGAGTATAG 1125 0.4249 MHGGLQDFLSLLFSNIGGVMASRAEQPINGKNKQKNVGGEGRNRRVLNDIGNLVAATKVEAAQKGSNNKTCQPQAACGLPRDLLFNIDEAYMDNELAAAEYIDDIYKFYKENEEDGCVHDYMGSQPDINAEMRSILVDWLIEVHRKLELMPETLYLTLNIVDRFLSVKAVSRRELQLVGISSMLIASKYEEIWAPQVNDFVCLSDNAYVSEQVLMMEKTILRKLEWCLTVPTPYVFLVWYIKGSTPPVKEMEHMAFFLAELSLMHYPTAILYRPSMIAASAVFVARCTLGRSPFWTSTLKHYTGYTEEQLSDCAKIMVNLHAAAPGSKLRAVYKKFCGSVRSLCCCSSFSSEELVKIVLNILVLVCVILSFVRV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo242g00004 374 SMART cyclin_7 138 222 IPR013763 -
Pumo242g00004 374 SMART cyclin_7 235 319 IPR013763 -
Pumo242g00004 374 SUPERFAMILY Cyclin-like 230 341 IPR036915 -
Pumo242g00004 374 FunFam G2/mitotic-specific cyclin 117 229 - -
Pumo242g00004 374 Pfam Cyclin, C-terminal domain 231 337 IPR004367 -
Pumo242g00004 374 PIRSF Cyclin_A_B_D_E 18 78 IPR046965 GO:0016538|GO:0044772
Pumo242g00004 374 PIRSF Cyclin_A_B_D_E 72 357 IPR046965 GO:0016538|GO:0044772
Pumo242g00004 374 Pfam Cyclin, N-terminal domain 104 228 IPR006671 -
Pumo242g00004 374 Gene3D - 118 229 - -
Pumo242g00004 374 ProSitePatterns Cyclins signature. 133 164 IPR006671 -
Pumo242g00004 374 SUPERFAMILY Cyclin-like 93 228 IPR036915 -
Pumo242g00004 374 PANTHER CYCLINS 70 335 IPR039361 -
Pumo242g00004 374 Gene3D - 104 337 - -
Pumo242g00004 374 SMART Cyclin_C_2 231 353 IPR004367 -
Pumo242g00004 374 MobiDBLite consensus disorder prediction 24 43 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo242g00004 25 339 Core Cell Cycle Gene Families AT2G26760 52.235 2.16e-127 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo242g00004 K21777 - gmx:100801274 482.256