Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo238g00001 ATGGCTGATGAGGGTAGTTTTGAGCATTACCATGTCCCACAACAAAGTAGAAGGGACAAGCTGAGAGTTTTCCCTCACAACCAACCTTGTTTCGTTGAATCTTCCTCCTCCACCCTTCACCCCACTTGTCCAACTTTACCCTCTCTCTACGATCCTTCTCTTATTCCTTCTGATTTGTTAGCTTGTGCCACCCAACAAGGTGGTGCTAAGGTACAAGGTTCCAATTTGATGATGGGGTTTGTTGAAGGAGGGGTTGTGAATGGTGATGCAATTCAAGTTATCAACAGTAACACAAACAACCACAACAACAACAACAACCCTTTTCTCTACCAGCTTCAGAACCTTAGGGAATTTGGTGACACCTACAATGATGGGAGTGAATCAATGATGGTGTTCAAGCCTGAGCCTTTGGCTTTGTCTTTGTCCTCCCACAGTAACAACAACACTCATCATAACCCTTTGGAACTGAACCTTCAGCGATATGGGGCTGTTATTCCGGGTTTGGTTGGAGGGAACAGTGAGGTTTCGAGGAATTCGGTTCCACTTGGACCCTTTACGGGGTATGCTTCGATATTGAAGGGATCGAGGTTCTTGAAGCCCGCACAGCAATTATTGGAAGAGTTATGTGATGTTGGGGTTCGTGGAATTTACGCTACCGAGAAGATTATTGCTCCTCCTGATGCATCGTTGATGGAACCTCCTCATGAGGGTTTGAGTGCTAGTAGTGGAGTTGTTGGTGGGGATGATCCACTTGGAGAATATGGGAATGAAGGTAGGAAGAAGAAGTGTAGACTATTAACCATGCTTGACGAGGGTTACAGGAGGTACAGGCAGTATTATCAACAGATGCATGCAGTAATAACTTCTTTTGAGTATGTTGCTGGCCTTGGTAATGCGGCCCCGTATGCAAGTTTGGCTATAAATGCCATGTCCAAACACTTTAAATGCTTGAAGAATGCTATTAGTGACCAGCTGCAGTTCATCAACAAGGCTCCTTTTCAGATAAGCAACAAGAAGGATGAACCTCCAAGGTTACTCAACAGTGATAGGGGCAATTACAGCCAAAGGCCAGGGTTTCTAGAGCACCATCAACCAGTTTGGCGACCTCAAAGAGGACTCCCTGAGCGTGCCGTGAGTGTACTCCGAGCCTGGTTGTTTGAACACTTTCTGCACCCTTATCCTACTGATACTGACAAGCTAATGTTGGCTAAACAAACCGGTCTATCTCGCAACCAGGTGTCTAATTGGTTTATTAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAGGAAATACATATGCTAGAATCACAGCAAGGTCAGAAAAGGCGCCAGAGAGAAGAACAAAGTAGGAACAATTTAAGTGATCATTTACCTTCAGAAAACTCTCTTGTTACTGAGAATCCATCCACCTCCATGGAAAAGTTTCATGATGCCCCTTATAAACAACACACTAGAAATGAACTTGCTAATATGCAAGTGAGGAGTCAGGAACAGCTGAATCAGACCAACACAAGCAATCAGCAAGTGGGTGTTGGAGTGAGCAATAACAATGGTGTGTCTCTCACACTTGGTCTTCATCAAAATCATCATCATGGTATTGGGTTGTCTGAGCCCTTTAGCATGAGTGCAGCAGCTCAACGTTTTGGTGTTGCCCTTCAGCCTCATGAGGGCTATGTTATAAGTGGTTTTGAATCACAAAATCGACACTTTGGAAGAGATGTTATTGGAGGAGCTGGGCAACTGTTGCATGATTTTGTAGGCTGA 1767 0.446 MADEGSFEHYHVPQQSRRDKLRVFPHNQPCFVESSSSTLHPTCPTLPSLYDPSLIPSDLLACATQQGGAKVQGSNLMMGFVEGGVVNGDAIQVINSNTNNHNNNNNPFLYQLQNLREFGDTYNDGSESMMVFKPEPLALSLSSHSNNNTHHNPLELNLQRYGAVIPGLVGGNSEVSRNSVPLGPFTGYASILKGSRFLKPAQQLLEELCDVGVRGIYATEKIIAPPDASLMEPPHEGLSASSGVVGGDDPLGEYGNEGRKKKCRLLTMLDEGYRRYRQYYQQMHAVITSFEYVAGLGNAAPYASLAINAMSKHFKCLKNAISDQLQFINKAPFQISNKKDEPPRLLNSDRGNYSQRPGFLEHHQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQGQKRRQREEQSRNNLSDHLPSENSLVTENPSTSMEKFHDAPYKQHTRNELANMQVRSQEQLNQTNTSNQQVGVGVSNNNGVSLTLGLHQNHHHGIGLSEPFSMSAAAQRFGVALQPHEGYVISGFESQNRHFGRDVIGGAGQLLHDFVG 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo238g00001 588 FunFam BEL1-like homeodomain protein 9 370 432 - -
Pumo238g00001 588 MobiDBLite consensus disorder prediction 436 475 - -
Pumo238g00001 588 SMART HOX_1 367 431 IPR001356 GO:0003677
Pumo238g00001 588 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 115 448 - -
Pumo238g00001 588 CDD homeodomain 367 428 IPR001356 GO:0003677
Pumo238g00001 588 SMART prehox3 186 323 IPR006563 -
Pumo238g00001 588 MobiDBLite consensus disorder prediction 455 473 - -
Pumo238g00001 588 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Pumo238g00001 588 Pfam Associated with HOX 191 322 IPR006563 -
Pumo238g00001 588 Gene3D - 370 432 - -
Pumo238g00001 588 MobiDBLite consensus disorder prediction 436 454 - -
Pumo238g00001 588 SUPERFAMILY Homeodomain-like 369 434 IPR009057 -
Pumo238g00001 588 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo238g00001 1 588 Homeobox Transcription Factor Family AT5G02030 43.243 2.25e-126 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo238g00001 POX 2.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo238g00001 - - vun:114185080 909.827