Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo231g00002 ATGAAAGAGTTGGAGAAAATAATGGAGTGTCACAGAACCATAGGTCAGGTAGTGCTACCAGTGTTCTATGATGTTGATCCCTCTGAAGTGCGTCATCAAAAAGGCCACTTTGGAAATGCATTTCAAATCCTTTTGGAAAGGATTTTTAAAGAAGAAGAGGAAAAGGAGATGGATTCAATGCTGCTTTGGAGGAAGACACTTCGCGAGGCTGCTGGCATCTCGGGGGTGGTAGCCCTAAATTCCAGTGGGGAAATGGAGATTGCAAATGAGATAGATCTCCTCGTGAAGCATTGGAGGGAGGCTCTTTGTGAGACTGCTGGCATCTCTGGGGATGTAGTCTTAAATTCAAGTAGAGAAACGGAGATGGCTAATAACCTCGTCGAGAAGCGTTGGAGGGACGCACTTTGTGAGGCTGCTGGCTTTGCGAGGTCTGTAGTCCTAAATTCCAGTGGAAAAATAGATGAGACAAACCTCGACGTGAAGCGTTGGACGGAGGCACTTCGTGATGCTACTGGTGTCGCAGGGGTTGTAGTCCTAAATTCCAGGAATGAAAGTGAGGCTATCAAAAATATTGTTGAAAATGTCACACGTTTATTAGACAAGACAAAGTTGTTCGTTGCTGATAATCCAGTGGGAGTAGAACCACGAGTGCAAGAAATGATTCAACTATTAGACCAGAAACAATCAAACGATGTTCTACTACTAGGGATATGGGGGATGGGAGGTGTTGGTAAAACAACTATTGCAAAAGCCATTTACAATAAGATTGGCCGCAATTTTGAGGGAAGGAGCTTCCTCGAACATATTAGGGAAGTTTGGGGGCAAGATGTTGGTCAAGTCTATTTACAAGAACAACTTCTATTTGATATCGAAAAAGAAACAAATACAAAGATACAAAGACTTCGCCGTAAAAGGGTACTTCTTATACTTGATGATGTGAATAAATTGCATCAATTGAATGTTTTGTGTGGAAGTCGTGAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACTAGAGATATGCATATACTTAGAGGGAGAAGAGTTGACAAAGTGTTCACAATGAAAGGAATGGATGAAGATGAATCTATTGAGCTTTTTAGTTGGCATGCATTTAAGCAAGCAAGTCCAAGAGAAGATTTTATTGAACTTTCTAAAAGTGTAGTTGCTTATTCTGGGGGGTTGCCACTAGCTCTTGAAGTCCTTGGGTCCTATTTGTTTGATATGGAGGTAACAGAGTGGAAGAATGTATTGGAGAAACTCAAGAAAATTCCTAATGATGAAGTGCAAGAGAAGTTAAAAATAAGCTATGATGGTTTAACTGATGTTACAGAAAAAGGAATATTCCTTGATGTAGCTTGTTTCTTTATAGGAATGGATAGAAATGATGTTATTCATATATTGAATGGTTCTAGACTTTGTGCAGAAAATGGAATACGTGTCTTGGTAGAGAGAAGCCTTGTAACTGTAGATGATAAGAACAAGCTTGGAATGCATGATTTGCTACGAGATATGGGAAGAGAAATCATTCGATCAAAATCACCAATGGAGCTTGAGGAGCGTAGTAGGTTATGGTTTCAGGAGGATGTGCTTGATGTATTATCAAAAGAAACTGAAACAAAAGCTATTGAGGGACTAGCTTTGAAGTTACCAAGAACTAATACAAAATGTTTGAGCGCTAAAGCTTTTAAGGAGATGAAGAAACTCAAGTTGCTTCAACTTGCTAGTATACAACTGGTTGGAGATTTTAAGTATCTTTCCAAAGATCTTAGATGGCTTTGTTGGCATGGATTTCCTTTAACATGCATACCATCAAACTTTTATCAAGAAAGTCTAGTTTCCATTGAGTTAGAAAACAGTAATGTTAATCTTTTGTGGAAAGAGGCCAAGGTAATGGAGAAGCTAAAAATTCTTAATCTTAGTCATTCTCATTACTTAACACAGACTCCAGACTTTTCAAATTTGCCAAATCTTGAAAAGCTAGTACTTATAGATTGTCTAAGGCTGTCTAAGGTTTCCTATACCATTGGACATCTCAATAAAGTTCTTACAATAAATTTTCAAGATTGTATTAGCCTTTGTAACCTTCCAAGAAGTATCTATAAGTTGAAATCTCTTAAAACACTCATTCTTTCTGGATGTTTAAAGATTGACAAGTTGGAGGAGGACTTGGAACAAATGGAGTCTTTGACAACCCTTATTGCGGATAAGACTGCAATAAGAAGAGTGCCCTTTTCAATAGTTAGATAA 2253 0.3835 MKELEKIMECHRTIGQVVLPVFYDVDPSEVRHQKGHFGNAFQILLERIFKEEEEKEMDSMLLWRKTLREAAGISGVVALNSSGEMEIANEIDLLVKHWREALCETAGISGDVVLNSSRETEMANNLVEKRWRDALCEAAGFARSVVLNSSGKIDETNLDVKRWTEALRDATGVAGVVVLNSRNESEAIKNIVENVTRLLDKTKLFVADNPVGVEPRVQEMIQLLDQKQSNDVLLLGIWGMGGVGKTTIAKAIYNKIGRNFEGRSFLEHIREVWGQDVGQVYLQEQLLFDIEKETNTKIQRLRRKRVLLILDDVNKLHQLNVLCGSREWFGSGSRIIITTRDMHILRGRRVDKVFTMKGMDEDESIELFSWHAFKQASPREDFIELSKSVVAYSGGLPLALEVLGSYLFDMEVTEWKNVLEKLKKIPNDEVQEKLKISYDGLTDVTEKGIFLDVACFFIGMDRNDVIHILNGSRLCAENGIRVLVERSLVTVDDKNKLGMHDLLRDMGREIIRSKSPMELEERSRLWFQEDVLDVLSKETETKAIEGLALKLPRTNTKCLSAKAFKEMKKLKLLQLASIQLVGDFKYLSKDLRWLCWHGFPLTCIPSNFYQESLVSIELENSNVNLLWKEAKVMEKLKILNLSHSHYLTQTPDFSNLPNLEKLVLIDCLRLSKVSYTIGHLNKVLTINFQDCISLCNLPRSIYKLKSLKTLILSGCLKIDKLEEDLEQMESLTTLIADKTAIRRVPFSIVR 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo231g00002 750 Gene3D - 176 352 IPR027417 -
Pumo231g00002 750 Gene3D - 358 442 IPR042197 -
Pumo231g00002 750 Gene3D Ribonuclease Inhibitor 537 750 IPR032675 -
Pumo231g00002 750 SMART AAA_5 231 360 IPR003593 GO:0016887
Pumo231g00002 750 Pfam NB-ARC domain 215 438 IPR002182 GO:0043531
Pumo231g00002 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 452 IPR027417 -
Pumo231g00002 750 Pfam TIR domain 2 91 IPR000157 GO:0007165
Pumo231g00002 750 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 75 IPR035897 -
Pumo231g00002 750 PRINTS Disease resistance protein signature 393 407 - -
Pumo231g00002 750 PRINTS Disease resistance protein signature 234 249 - -
Pumo231g00002 750 PRINTS Disease resistance protein signature 702 718 - -
Pumo231g00002 750 PRINTS Disease resistance protein signature 300 314 - -
Pumo231g00002 750 ProSiteProfiles TIR domain profile. 1 71 IPR000157 GO:0007165
Pumo231g00002 750 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 733 IPR044974 GO:0006952
Pumo231g00002 750 SUPERFAMILY L domain-like 548 745 - -
Pumo231g00002 750 Gene3D - 1 93 IPR035897 -
Pumo231g00002 750 SUPERFAMILY "Winged helix" DNA-binding domain 428 535 IPR036390 -
Pumo231g00002 750 Coils Coil 718 738 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo231g00002 161 748 WRKY Transcription Factor Family AT4G12020 33.871 4.22e-75 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo231g00002 - - gmx:100800776 1130.16