Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo229g00002 ATGGCTGGTGACATGCACCAACCACAACCCTCTTCAGGGAGAGCCTTGCCTCCTCCTGATTCAGAAGAATTCTCAACCTTGTTCAACCAACTCCTCCACAACTCTCCCCCACTAGGAATGGACCCCAATCATTCAGCTTCTGATTTCACCTCACCCAACACCAACACCAACACCAACACCAACCACCCTGTTCCTTCCTCTCCCTCAAATTTTCATTTTTCTGACCCCCATCATTACATCCCTGCCTCCGATGCCAACACCTTCAAACAACACAACCACAATCACACCCCTGATTTCACTTCTTCTCCTGTTGAGGAGAGTGTGGAGGCATCGAAACTTGTCCCACCACCACGTTCTTCGTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGTCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGGGCTAAGACCTATGATAATGCCTCAGACTGGGTTGAACCTTGATGGGAGTAATGGATTTCAGAATTCTACCAGTGCAATTGCCTCATCTTCAAATGATGAAAGCTTGGTGCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAAATCAGTCTGTTGTACCCTCAGTGACAAATATAGCTACTTCGGATACCTCATCCACTTTTCATCCCTCTATTAAGGATGCACTCTACGGCAACATGCCACAACTGTTTATGGATACAACAAAGATTGGAAAACCCTCTCCAGATGTGTCTTAA 894 0.443 MAGDMHQPQPSSGRALPPPDSEEFSTLFNQLLHNSPPLGMDPNHSASDFTSPNTNTNTNTNHPVPSSPSNFHFSDPHHYIPASDANTFKQHNHNHTPDFTSSPVEESVEASKLVPPPRSSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEVIEYLKQLQLQVQMLMMRNGLSLHPMSLPGGLRPMIMPQTGLNLDGSNGFQNSTSAIASSSNDESLVRHAFSFPKQCSISNQSVVPSVTNIATSDTSSTFHPSIKDALYGNMPQLFMDTTKIGKPSPDVS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo229g00002 297 Gene3D - 121 185 IPR036638 GO:0046983
Pumo229g00002 297 MobiDBLite consensus disorder prediction 124 138 - -
Pumo229g00002 297 MobiDBLite consensus disorder prediction 1 138 - -
Pumo229g00002 297 Pfam Helix-loop-helix DNA-binding domain 130 176 IPR011598 GO:0046983
Pumo229g00002 297 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 16 273 IPR031066 -
Pumo229g00002 297 MobiDBLite consensus disorder prediction 40 73 - -
Pumo229g00002 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Pumo229g00002 297 SMART finulus 132 181 IPR011598 GO:0046983
Pumo229g00002 297 CDD bHLH_AtPIF_like 127 188 IPR047265 -
Pumo229g00002 297 FunFam Basic helix-loop-helix transcription factor 121 184 - -
Pumo229g00002 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 186 IPR036638 GO:0046983
Pumo229g00002 297 MobiDBLite consensus disorder prediction 85 107 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo229g00002 125 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 65.766 2.05e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo229g00002 HLH 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo229g00002 - - gmx:100785332 479.944