Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo229g00001 ATGCAAGGGCAGAGAGGTACAATTGGTTCCTTGCCAAAAACCTTGGAATTTGATTGTGGATCTACATCAAGTGCTGCTACAGTTGAACCACATATTTTCTGGAATAATATGCGGAATCCTGCAGAAAATCAATTTGTACTTTCCCCCAGTGAAATAAACCCATCTTATGTGAATCCTATAAACCATGAATGGCAGAACTTGAGTGGATGGAGCTTAGGTGAGCCAAGTTCCAGTAATACACAGAATGGGGTTACCAACAATGAGCAGAAAAGAGAGCTAGGATTATCGTCTTCATTAAGTTCTGGTGCTATAGCTGGTCCACGACTTGAAGAAAGGCGCTTTGAACCAAACAATACTTTTTCATTGGACAACATCAATACAAGTCCTATGTATATGCGTAGCTCCAGTTCTCACTTGGTGCCGCAGAACCTCAACTTAAGTGCAAGTTTATCAGATAGTGGCACTGATAATAGCTATCATGTGGAATGTCCTCCTAACTTGAACAAGTCTAGTGGACCGGTGAATGAGCATGTTCCACCAACAATTGGTTCTGGTCCTTTTCTGCTTCCTTCTGGAACTAATGGCTTTTTAGGTGAGGATACTGATGGTAGGCCAGGTTGTTCTCTAGACACCCGCCGTGTATCTTGTAAAAGAAAGGCTGTTGAACGGAATGTTGGACAATCTTCAGGCGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGTAGTACTTGGAGCACTCTTCCTACTCAGGATTATGGGGGGAGCAGTTTTAACAGATCTGCCCCAACAGAACAGGTAAATGCAAGACTTGGCCTGAGTACAGGGGATGGAGCCTCTGAAAGCATTCCCGTGTCAAATGTTGCAGGAAGCTCAGAAAGTTTCCACAGAAATTTTCGTCCGAGGATAAGTCCTTCAAGTCAACAAATTTCCGTTCCTCCCACTGCAATCTCAAGTGGGAATGTTATTAGGAATTCTGGTGTTTCTTCATCCTCTCCAATATTGCAACGATTTCATCCTGTTGATAATTCTTTGGACTTGAGGTCAGTACCACCTGTTGATACTATGGTTCCTCAAAGTCAGCCCCTTGTTATTCATGTTCCTGCTTTACCAAGGAATGTGCAGTCGTTCAGGTGGAGTGGTGGTTCCAGTTCAACAAACAACCATTCCTCAAACTTGGTTATGTGTGCAGATAGAAATAATCTACCAAACGAGGAAGCAAGCTCAAGAAGTATGCCTAGAAACATTATGGAATACCCAATGTTTGTGCCCGCAACCAATGTAAGAAATGTTGTTCGAAATCCAGCTAGAGCTTCAAATAATGCAAATTTGAGTATTCCAGGAAATGTTGGTTCTTCATCGCGGACAGGCTCAAATTCAGCTGTCAATCCACCACCTGCCTCGGCGTGGGTTTCTCGTCCTAATCCTCAGCAGTATCCACGCAGGTTATCTGAATATGTTCGTCGGTCCTTGTTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAGCAATAATTATACTTCCTTCCGTGGTCCTTCTACTTCATCTGAATCAAGGGGACTGTCATCCGGTGTAAACCCATTCGAGAGGCAAGGTGATAGTGAATTTGGAATTCCATATTCATTACGATCTTTGGCTGTTGCTGGTGAAGGAAGTAGTAGAATTGTATCTGAGCTCCGCAATGTGTTGGGCCTCATGCGTAGGGGTGGGAACCTGCGATTTGAGGATGTTATGATCCTCGACCATTCAGTGTTCTCTGGAATTGCTGATATTCATGATCGACACAGGGATATGAGACTTGATGTTGATAACATGTCTTACGAGGAGCTATTGGCTCTGGAAGAACGCATTGGAAATGTGAGCACTGGATTGAGTGAGGAGACTATATTGAAATTTTTGAAAAAGAAAAAGTATACAGCTGAACCAGGTTCTCAGCATGAGGCAGAACCCTGCTGTGTTTGTCAGGAGGAGTATAAAGATGGAGATGATATAGGATCACTGGATTGTGGGCATGATTACCATACAGATTGTATCAAACAGTGGCTAATGAATAAGAATTTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACCTGA 2097 0.433 MQGQRGTIGSLPKTLEFDCGSTSSAATVEPHIFWNNMRNPAENQFVLSPSEINPSYVNPINHEWQNLSGWSLGEPSSSNTQNGVTNNEQKRELGLSSSLSSGAIAGPRLEERRFEPNNTFSLDNINTSPMYMRSSSSHLVPQNLNLSASLSDSGTDNSYHVECPPNLNKSSGPVNEHVPPTIGSGPFLLPSGTNGFLGEDTDGRPGCSLDTRRVSCKRKAVERNVGQSSGGGSSSYSQHTDGSTWSTLPTQDYGGSSFNRSAPTEQVNARLGLSTGDGASESIPVSNVAGSSESFHRNFRPRISPSSQQISVPPTAISSGNVIRNSGVSSSSPILQRFHPVDNSLDLRSVPPVDTMVPQSQPLVIHVPALPRNVQSFRWSGGSSSTNNHSSNLVMCADRNNLPNEEASSRSMPRNIMEYPMFVPATNVRNVVRNPARASNNANLSIPGNVGSSSRTGSNSAVNPPPASAWVSRPNPQQYPRRLSEYVRRSLFSPGLEAAGSSSNNYTSFRGPSTSSESRGLSSGVNPFERQGDSEFGIPYSLRSLAVAGEGSSRIVSELRNVLGLMRRGGNLRFEDVMILDHSVFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKFLKKKKYTAEPGSQHEAEPCCVCQEEYKDGDDIGSLDCGHDYHTDCIKQWLMNKNLCPICKTTGLAT 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo229g00001 698 ProSiteProfiles Zinc finger RING-type profile. 651 692 IPR001841 -
Pumo229g00001 698 MobiDBLite consensus disorder prediction 220 262 - -
Pumo229g00001 698 SMART ring_2 651 691 IPR001841 -
Pumo229g00001 698 SUPERFAMILY RING/U-box 642 694 - -
Pumo229g00001 698 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 212 696 IPR045191 GO:0061630
Pumo229g00001 698 MobiDBLite consensus disorder prediction 226 262 - -
Pumo229g00001 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 695 IPR013083 -
Pumo229g00001 698 FunFam E3 ubiquitin-protein ligase MBR2 619 696 - -
Pumo229g00001 698 MobiDBLite consensus disorder prediction 497 529 - -
Pumo229g00001 698 MobiDBLite consensus disorder prediction 439 477 - -
Pumo229g00001 698 MobiDBLite consensus disorder prediction 91 112 - -
Pumo229g00001 698 MobiDBLite consensus disorder prediction 497 530 - -
Pumo229g00001 698 Pfam Ring finger domain 651 692 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo229g00001 1 698 C3H Transcription Factor Family AT2G15530 33.732 4.78e-85 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo229g00001 - - gmx:100791026 998.423