Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo228g00001 ATGCCAAGGGCCACTGACGTTCCTGAAATACAACAGAGACGGCGATCTCCTCTTCTCCTTGCGCCAAGGACCACAACCCTACCGTCTGGATATTCGGGACGACTCATTACGGGAAGTGTCGATCAGACCGCGAAGCTATGGAACGTCCAAACCGGTCAGCAATTGTACACCTTCAATTTCGATTCCCCGGCCAGGTCTGTTGATTTCTCCGTCGGCGATAAGCTCATCGTTATCATCACTGATCCCTTCACGGAATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAAAGATCCGAACGAACAGAGCGGGGAATCTGTGCTTCTCATTAAGGGCCCTCAGGGAAGGATAAACAGAGTTATTTGGGGACCCCTCAACACAACCATTATTAGTGCTGGGGAAGATGCTGTTATTCGAATTTGGGATTCTGAGGCGGGTTATGTGGTTTGCGAGTTTTGCGGTCGCGGGCTTAAATGGACGGACTTACCCATTTGCCCAGCTCTACTCCATAGTATACCAGATCTCGATGATGGGAAAGAGTTTGTGGTGAACTCCGTAGGATGCGACGGAGCAGAAATTAATAACACCTTTCAGATCTCGTCATACTATTTTCATTATATTGTTCTCACCAGAGCATTTGAAGAGGCTACAAGCACGACACCTTTCAAGAAAGAGTTTTAA 681 0.4787 MPRATDVPEIQQRRRSPLLLAPRTTTLPSGYSGRLITGSVDQTAKLWNVQTGQQLYTFNFDSPARSVDFSVGDKLIVIITDPFTELPSAIHVKRIAKDPNEQSGESVLLIKGPQGRINRVIWGPLNTTIISAGEDAVIRIWDSEAGYVVCEFCGRGLKWTDLPICPALLHSIPDLDDGKEFVVNSVGCDGAEINNTFQISSYYFHYIVLTRAFEEATSTTPFKKEF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo228g00001 226 Gene3D - 28 184 IPR015943 GO:0005515
Pumo228g00001 226 ProSiteProfiles Trp-Asp (WD) repeats profile. 35 57 IPR001680 GO:0005515
Pumo228g00001 226 ProSiteProfiles Trp-Asp (WD) repeats profile. 110 142 IPR001680 GO:0005515
Pumo228g00001 226 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 110 142 - -
Pumo228g00001 226 SUPERFAMILY WD40 repeat-like 31 167 IPR036322 GO:0005515
Pumo228g00001 226 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 32 150 - -
Pumo228g00001 226 SMART WD40_4 103 142 IPR001680 GO:0005515
Pumo228g00001 226 SMART WD40_4 14 48 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo228g00001 32 149 Eukaryotic Initiation Factors Gene Family AT2G46280 63.333 5.80e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo228g00001 K03246 - gmx:100793485 210.69