Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo227g00003 ATGGCAAATCATGGTGCAGTGTCTGAAACCAAGTATAAGTATGTCGTTTTCCTTAGTTTTAGGGGTGAAGATACTCGTCACACCTTTACTTGTCATCTCTATCATGCTTTGCACCGGAAGGGAATTAACACCTTCATGGATGATGAGGAAATGAAGCTTGGAGATCAACTTGGTCCTAGGCTTCTTGAAGCCATTGAAGAATCAAGGATTTCAATTGTTGTTTTCTCAGAAAATTATGCAGATTCTTCGTGGTGCCTTGATGAACTTGTCAAGATCCACGAGTGTATGAAGTCAAAAAACCAGCTCGTTTGGCCCATCTTCTACAAAGTGGACCCTTCAGATGTGAGGCATCAGAATGGAAGTTACAGTGATGCCATGACTAAGCATGAAACAAGATATGGGAAAGACTCGGAGAAGGTGCAAAAATGGAGGTCAGCCTTGAAAGACATAGCCAACTTGAAAGGAGAACACTTGAAAGTGGAACAAAGGAGGGACGAATCCAAGTTTATTGATGCTCTTTCTAGTCAGATTTTCATTAAAGTATCTCCTAAAGATTTATCTAGTAATGAGCATATAGTTGGACGCGAGTATCTAGTTGAAGAATTGAAATCACTTCTAGAACTTGAGTCTTGTAATATCACTTGCCTGTTAGGGATTCATGGAACAGGTGGAATTGGCAAAACCACACTTGCCAAAGCTTTGTATGACTCCATTTACAAGCAGTTTCAAGGTTCATGCTTTCTCTCCAACGTTAGAGAAACTTCAAATCAAATCCAGGGCATAAAAGAACTGCAAGAAGGGCTTCTATCAGGGATACTTGAGGACAACATCCAGTTGAAAAGTATTGAAGAAGGAATTGGAACAATAAAAAGTAGACTTGGTTCCAAAAGAGTTCTTTTAGTTCTTGATGATGTTGATGACATTGAACAGTTGAAAAAGTTGGCACAGGAACGTGATTGGTTTGGTCCTGGGAGCAGGATCATCATAACGACGAGAGATAAACATTTGCTAGCTGTTGGTCAGGTTGAAAAAAGATATGAAGTGAAAGTGCTAAACGACCAAGAGTCTCTGGAGCTCTTTTGTCAGAGTGCCTTTAGAAAGAGCTATCCTGAAACAAACTATGAAGACCTTTCCAATCGCGCAATGAGATGTTGCAAAGGCCTTCCGTTGGCCTTAAAAGTACTAGGCTCTCATATGGTGGAAAAAGATTTGGGTGGATGGAATGATGCATTGGATAGATATGAAAATAGTCCACATCCAAAAGTTCAAGAAGTTCTTAGAATAAGCTATGATAGCTTGTCCTTGGATGAGAAGAACATTTTTCTCGACATTGCATGCTTCTTCAAAGGGCGAAAATTGGAATATGTTAAAAGAGTACTAGATGCATGCGACTTCAAATCAGGAGATGGTATTGCAACATTAGTTAATAAATCTCTTTTAATGTCAACCATTGCTTGGGGATGCATGACCTAA 1473 0.3958 MANHGAVSETKYKYVVFLSFRGEDTRHTFTCHLYHALHRKGINTFMDDEEMKLGDQLGPRLLEAIEESRISIVVFSENYADSSWCLDELVKIHECMKSKNQLVWPIFYKVDPSDVRHQNGSYSDAMTKHETRYGKDSEKVQKWRSALKDIANLKGEHLKVEQRRDESKFIDALSSQIFIKVSPKDLSSNEHIVGREYLVEELKSLLELESCNITCLLGIHGTGGIGKTTLAKALYDSIYKQFQGSCFLSNVRETSNQIQGIKELQEGLLSGILEDNIQLKSIEEGIGTIKSRLGSKRVLLVLDDVDDIEQLKKLAQERDWFGPGSRIIITTRDKHLLAVGQVEKRYEVKVLNDQESLELFCQSAFRKSYPETNYEDLSNRAMRCCKGLPLALKVLGSHMVEKDLGGWNDALDRYENSPHPKVQEVLRISYDSLSLDEKNIFLDIACFFKGRKLEYVKRVLDACDFKSGDGIATLVNKSLLMSTIAWGCMT 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo227g00003 490 Gene3D - 185 348 IPR027417 -
Pumo227g00003 490 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 155 IPR035897 -
Pumo227g00003 490 Gene3D - 350 434 IPR042197 -
Pumo227g00003 490 ProSiteProfiles TIR domain profile. 12 177 IPR000157 GO:0007165
Pumo227g00003 490 Pfam NB-ARC domain 195 424 IPR002182 GO:0043531
Pumo227g00003 490 Gene3D - 10 184 IPR035897 -
Pumo227g00003 490 Pfam TIR domain 13 187 IPR000157 GO:0007165
Pumo227g00003 490 SMART till_3 13 153 IPR000157 GO:0007165
Pumo227g00003 490 PRINTS Disease resistance protein signature 216 231 - -
Pumo227g00003 490 PRINTS Disease resistance protein signature 292 306 - -
Pumo227g00003 490 PRINTS Disease resistance protein signature 385 399 - -
Pumo227g00003 490 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 480 IPR044974 GO:0006952
Pumo227g00003 490 FunFam Disease resistance protein (TIR-NBS-LRR class) 352 434 - -
Pumo227g00003 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 444 IPR027417 -
Pumo227g00003 490 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 182 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo227g00003 8 480 WRKY Transcription Factor Family AT4G12020 30.417 3.21e-49 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo227g00003 - - gmx:100801890 728.783