Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo226g00003 ATGGCTCTGGGATCATGTTCCTCTTCCTTCACCGATAACTCTAAATATGATGTGTTCCTCAGCTTCAGAGGGGAAGACACACGTTATGGTTTTACTGGGCATCTCTACAAAGCTCTTTATGGAAGGGGAATCCGCACTTTCATCGATGATGAGAAGCTTCAAAGAGGAGAGGAAATAACACCGGCACTTGTGAAGGCAATTCAAGAGTCCAGGATTGCCATCATTGTGCTCTCAAAAAACTATGCTTCTTCCTCATTTTGTTTACATGAACTTGCAACTATCCTTGAGTGCCTTAAGGGAAAAGATCGGTTGGTTTTGCCGGTTTTTTATAAGGTAGATCCTTCTCATGTACGTCACCAGAAAGGTAGTTATGGAGGTGCATTGGCTGGGCACGAGAAGGAGAAGTTGGAGAAATGGAAGATGGCTCTGCATCAAGTTGCTAACTTGTCTGGCTACCATTTCAAAGATGGAGATGAATATGAATACAAGTTTGTTGAGAAGATTGTTGAGCAGGTCTCTAGCAAGATTAACCGTGTTCCATTACATGTTGTGGAGTACCCAGTTGGACTTGGGTCACAAGTGCTAAAAGTAAGGAAGCTTTTGGATGTTGGATGTGATGATGGAAAATCAACACTTGCTCGAGCTGTCTATAATAATTTAATTGCTGAGAATTTTGATGGTTTGTGTTTTCTAAAAAACGTAAGAGAAGAGTCAAACAAACATGGGTTAGAACACCTACAAAGAATCCTTCTTTCAAAAATACTTGGAGAGAAGGACATCAACTTTACATGTTGGGAAGAAGGAGCTTCAATGATACCACAAAAGCTCCATCGAAAGAAGGTTCTCCTAGTTCTAGATGATGTTGACAAGCCCGAGCAATTACAGGCAATTGCTAGAGGACGTAATTGGTTTGGTCCCGGCAGCAGAATCATCATCACAACTCGGGACGAACAATTGCTAGCACCTCATGAAGTTATTGAGATATATGAGGTGAAGGAATTGAACAAGAATGATGCACTTCAATTACTTACATGGAAAGCTTTTAAAAAGGAAAAAGCTGATCCAAGGTATGAGCAGGTCTTGAATCGTGTAGTAAAATATGCTTCTGGCCTTCCATTGGCTTTGGAAGTGATAGGTTCCAACTTGTTTAGAAAAAGTATTGAAAAATGGGAAGATGCCATAAATCAGTATGAAAGAAGTCTTCCTGATGGAATCCAAGGTATTCTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGGGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAATGGATATGAATTGACAGAGGTTGAAGATATACTTTGTGCTCATTACGATCACAACAAGAAACATCATATTGACGTGTTGGTTGAAAAATCTCTCATGAAGCTCGATTATTTTGATGGTTCTACAGTTACATTGCATGGCTTGATTGAGCACATGGGTAAAGACATTGTAAGGCAGGAATCACTAGATGAACCAGAAGAGCGCAGTAGATTATGCTCATGGGAAGATATAAAACAAGTTTTGGAAGACAATACTAAGTTCGTGAATCTAACGGTTTTGAATTTTGACGGGTGTGAATATTTAACACAGATACCTAATGTATCTGGTTCCCCAAATTTGGAGAAACTTTCATTTAAACGGTGTGATAAATTAGTTAAAGTTCACGAGTCGGTTGGTTATCTTGGTAAACTTAAAAAATTGAGTGCTCTTGGTTGCGCCAAGCTTGAGAGTTTTCCATCCATCCATTTGACCTCTCTAAAAGAACTTAATCTTTCATTCTGTTCGAGTCTTGAGAGCTTTCCAAAAATATTAGGAAAAATGGAAAACATAAGGGAACTTCATTTGATGAACACTCCCATAAAAGAATTGCCATTTTCATTTCACTATCTTATCCGACTCGAACGTTTATCACTGCATGGCTGTGGAAGTGTTCAGTTTCCAAGTAGCATTGTCATGACGCCAGAACTGACAAACAATGATGCTTTGCATTTGAAAGAGTGGAAATGGATAAAACAGGAAGAGGATGAAGAAAATGTGGACTCAATAGAATCTTTGAAGGTACGCGGTCTTTCTGTCCCAGCGTGCAACCTGAATGATGATTTTTTTTCAATAGGTTTCATGCGGTTTGCTCGCATGCAATTTTTAATCCTATCGGGGAATAATTTCACATGCCTTCCTAAATGCATCGAAGAATTTCATTCTTTACGGTGCCTTAACGTGAGTAATTGCAAGCAACTTCAGGAAATTAAAGGGGTTCCCCCAAACTTAACACGTTTTTATGCAGGAAACTGTATATCCTTGACTTCCTCGAGTACAAGCATGTTCATAAATCAGGAATCGCAATTGGCTCAAATATATGAATTTTGTTTGCCTGGAATATGTATTCCAGAGTGGTTTGATCATGAAAGTAGGGGACCTTCAAGTTCTTTCTGGTTTCGTAATAAGCTCCCTAACAAAATTCTTTGTTTTCTAATTGCACCTGTGGAATACAATTACAATAGAGGGGACTTTCTTCCTGTGGTGCTCATCAATGGCAAAGTTCATGGATCTTCCTTACATAGTGACGGGAAAACAGTGAGGATGGATCATACAAATCTTTCTGTTATAGATTTGAGTTATTCTCAGTTTAAAGTGCCTTCAGAAAATGAATGGAACCATGTGGAAGTTACATATACGGGTGTCATAGAGATCTCATCTATTGTTAAAGCAAGCGGAATCCATGTATTCAAACAAGAAAGCAGCACAGAAGATATTCGATTCACTGATCCTAACAAGAAGAGAAAATTAGATGATTATCTCAACAGCTCGGAATCATGA 2829 0.3881 MALGSCSSSFTDNSKYDVFLSFRGEDTRYGFTGHLYKALYGRGIRTFIDDEKLQRGEEITPALVKAIQESRIAIIVLSKNYASSSFCLHELATILECLKGKDRLVLPVFYKVDPSHVRHQKGSYGGALAGHEKEKLEKWKMALHQVANLSGYHFKDGDEYEYKFVEKIVEQVSSKINRVPLHVVEYPVGLGSQVLKVRKLLDVGCDDGKSTLARAVYNNLIAENFDGLCFLKNVREESNKHGLEHLQRILLSKILGEKDINFTCWEEGASMIPQKLHRKKVLLVLDDVDKPEQLQAIARGRNWFGPGSRIIITTRDEQLLAPHEVIEIYEVKELNKNDALQLLTWKAFKKEKADPRYEQVLNRVVKYASGLPLALEVIGSNLFRKSIEKWEDAINQYERSLPDGIQGILKVSFDALEEEGKSVFLDIACCFNGYELTEVEDILCAHYDHNKKHHIDVLVEKSLMKLDYFDGSTVTLHGLIEHMGKDIVRQESLDEPEERSRLCSWEDIKQVLEDNTKFVNLTVLNFDGCEYLTQIPNVSGSPNLEKLSFKRCDKLVKVHESVGYLGKLKKLSALGCAKLESFPSIHLTSLKELNLSFCSSLESFPKILGKMENIRELHLMNTPIKELPFSFHYLIRLERLSLHGCGSVQFPSSIVMTPELTNNDALHLKEWKWIKQEEDEENVDSIESLKVRGLSVPACNLNDDFFSIGFMRFARMQFLILSGNNFTCLPKCIEEFHSLRCLNVSNCKQLQEIKGVPPNLTRFYAGNCISLTSSSTSMFINQESQLAQIYEFCLPGICIPEWFDHESRGPSSSFWFRNKLPNKILCFLIAPVEYNYNRGDFLPVVLINGKVHGSSLHSDGKTVRMDHTNLSVIDLSYSQFKVPSENEWNHVEVTYTGVIEISSIVKASGIHVFKQESSTEDIRFTDPNKKRKLDDYLNSSES 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo226g00003 942 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 178 - -
Pumo226g00003 942 Gene3D Ribonuclease Inhibitor 498 608 IPR032675 -
Pumo226g00003 942 PRINTS Disease resistance protein signature 585 601 - -
Pumo226g00003 942 PRINTS Disease resistance protein signature 368 382 - -
Pumo226g00003 942 PRINTS Disease resistance protein signature 275 289 - -
Pumo226g00003 942 Pfam NB-ARC domain 208 405 IPR002182 GO:0043531
Pumo226g00003 942 Gene3D - 10 184 IPR035897 -
Pumo226g00003 942 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 508 648 IPR044974 GO:0006952
Pumo226g00003 942 Gene3D - 333 417 IPR042197 -
Pumo226g00003 942 Gene3D - 207 328 IPR027417 -
Pumo226g00003 942 SUPERFAMILY L domain-like 508 802 - -
Pumo226g00003 942 ProSiteProfiles TIR domain profile. 14 176 IPR000157 GO:0007165
Pumo226g00003 942 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 152 IPR035897 -
Pumo226g00003 942 SUPERFAMILY "Winged helix" DNA-binding domain 404 513 IPR036390 -
Pumo226g00003 942 Gene3D Ribonuclease Inhibitor 609 891 IPR032675 -
Pumo226g00003 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 427 IPR027417 -
Pumo226g00003 942 Pfam TIR domain 15 177 IPR000157 GO:0007165
Pumo226g00003 942 SMART till_3 15 149 IPR000157 GO:0007165
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo226g00003 10 769 WRKY Transcription Factor Family AT4G12020 25.608 7.05e-45 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo226g00003 - - vra:106764825 1006.51