Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo220g00007 ATGCTGAGGTCTTCAATGTTACCCTCTGCTGCTCCATTTGTGTTCTCTGGTGGTGACGACTATAGCGGTTCACCCGGGAATGATCCAAACTATGGCAAGCTTGTGATGTTTTCTGGTGATGTTGAATTTTCTGATGGTGCTCATAATCTTCTTAACAAAGACAGTGAAATAGGCCGCGGAGGATTTGGAGTTGTTTATTGCACTGTCCTTAGAGATGGTCATTGTGTTGCAATCAAGAAGCTTACGGTGTCCACCTTGACCAAGTCTCAAGAAGACTTTGAGAGGGAGGTTAAAATGCTTGGGAAGATCAAGCATCAAAATCTCGTGGCACTTGAAGGTTATTATTGGACTCCATCCTTGCAGCTCCTAATTTATGAGTACCTAGCCAGAGGGAGTTTGCAAAAGCTTCTACATGATGATGATAGTAGCAAAAATGTGCTTTCTTGGAGAAAAAGATTCAAGATCATTCTTGGAATGGCAAAAGGGTTGGCCTATTTGCACCAAATGGAGTTAATTCACTATAATCTAAAATCAACCAATGTTTTCATTGATTCTTCTGATGAGCCAAAGATAGGAGACTTTGGCTTGGTGAGGCTATTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATACATGGCTCCTGAGTTCGCTTGCCGCACGGTTAAGATAACTGAGAAATGTGACATTTATAGTTTTGGAATTTTGATTTTGGAGGTGGTGACAGGAAAAAGGCCTGTGGAATACATGGAGGATGATGTGGTTGTTCTTTGTGACAAAGTGAGGAGTGCATTGGATGATGGCAAAGTGGGGCAATGTGTTGATGAGAAGCTTAAGGGTAATTTTGCTGCAGAGGAAGCAATTCCTGTGATAAAATTGGGGTTGGTTTGTGCTTCACAAGTGCCCTCAAACCGTCCTGATATGGCTGAGGTAATCAACATATTAGAGCTGATCCAATGTCCTTCAGAGGAATTACAATGA 999 0.4194 MLRSSMLPSAAPFVFSGGDDYSGSPGNDPNYGKLVMFSGDVEFSDGAHNLLNKDSEIGRGGFGVVYCTVLRDGHCVAIKKLTVSTLTKSQEDFEREVKMLGKIKHQNLVALEGYYWTPSLQLLIYEYLARGSLQKLLHDDDSSKNVLSWRKRFKIILGMAKGLAYLHQMELIHYNLKSTNVFIDSSDEPKIGDFGLVRLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYSFGILILEVVTGKRPVEYMEDDVVVLCDKVRSALDDGKVGQCVDEKLKGNFAAEEAIPVIKLGLVCASQVPSNRPDMAEVINILELIQCPSEELQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo220g00007 332 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 45 127 - -
Pumo220g00007 332 PIRSF ILK 42 330 - -
Pumo220g00007 332 CDD STKc_IRAK 57 324 - -
Pumo220g00007 332 Gene3D Transferase(Phosphotransferase) domain 1 128 327 - -
Pumo220g00007 332 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 128 330 - -
Pumo220g00007 332 ProSiteProfiles Protein kinase domain profile. 51 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo220g00007 332 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 48 325 - -
Pumo220g00007 332 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524
Pumo220g00007 332 Gene3D Phosphorylase Kinase; domain 1 38 127 - -
Pumo220g00007 332 Pfam Protein kinase domain 52 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo220g00007 332 SUPERFAMILY Protein kinase-like (PK-like) 52 325 IPR011009 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo220g00007 4 328 Receptor kinase-like Gene Family AT3G56370 69.846 2.51e-164 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Pumo220g00007 Pkinase 4.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo220g00007 - - gmx:100791204 644.425