Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo220g00004 ATGAGCCAACGTGTCCCTAACTGCGATGTGGACGACAATAACGTTCCCACAGCGACAAAAATCCCTGTCCTTCCCAGCTTCAATTTCATATCCCATGAAGTCCCAATGTTGGGCTACCATGTTGCAGAACTACCATGCAAAAAAGGACAATCTTTGACGCACGAAGGCACCACCGGGAACCTAACTACATGGGACAAACCACCTACGAGTGGTGGTACCTTGGAGTCCATAGTAAACCAACGTGTCGGCAAAAACCGCTACAAATTGGTTACTATGGACGCCTTAGTGCCCTGTTCCAGGAAACAGGGCACACCGAAGCGAGTGGAGTCAGGAAGGCTTGGCCCGTGCATGGAGGGTCGCTCCGCGCGCGTGGTGTCACGCGCTGGGGTGGTGGCGCGTGGGCCTACAACTCAAGAGTTGAGTGGCTGCAAGGATTGGAGTGGGAGTGGGAGTGGGAGTGAAACTTGTCATAGGGACTCGAGTGTGGCTTTCAATTCTGCCACCATGGGTTCGCCGGAAAACACCACTAGCTCCGGCAAACAGTGCACCAGGACCACCGCCAACGACGACCGCGATTCCATTAGCCACCATATATCACAGAGTGAGGCACCGGATGAGGATTACAAGGCAACAAAAGTTGATAGATCTTCTGGGTCCAACAAAAGAATCAAAGCTAATTCAGTTGTGCACAACCAATCTGAAAGGAGAAGGAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAGATGGTCCCAAATTCCAGTAAGACCGATAAAGCTTCGATGCTAGATGAGGTGATCCAATATATGAAGCAATTGCAAGCGCAAGTGCAAATGATGAATTGGATGAAAATGTACTCCTCCATGATGCTGCCAATTACCATGCAACAACAACAACTTAAAATGTCTATGATGATGGCTCAGATGGGCATTGGAATGGGAATGAATAAGGATATGGTTATGAATATGAACAGCATGAACATTCCTGGCATCCCTCCTATGCTCCCCCTTCCTCCTTTCATGCCTATGGCCTCATGTGGCGATCCATTACAAGGAGCACCAGAGAAGTCCGTGACCATGGATGCATACACTAAGATGGCTGCCCTGTATCACCAGCTGTTTAATCCTCCTGCTTCTAATTCCAAGAACTGA 1155 0.4874 MSQRVPNCDVDDNNVPTATKIPVLPSFNFISHEVPMLGYHVAELPCKKGQSLTHEGTTGNLTTWDKPPTSGGTLESIVNQRVGKNRYKLVTMDALVPCSRKQGTPKRVESGRLGPCMEGRSARVVSRAGVVARGPTTQELSGCKDWSGSGSGSETCHRDSSVAFNSATMGSPENTTSSGKQCTRTTANDDRDSISHHISQSEAPDEDYKATKVDRSSGSNKRIKANSVVHNQSERRRRDKINQRMKELQKMVPNSSKTDKASMLDEVIQYMKQLQAQVQMMNWMKMYSSMMLPITMQQQQLKMSMMMAQMGIGMGMNKDMVMNMNSMNIPGIPPMLPLPPFMPMASCGDPLQGAPEKSVTMDAYTKMAALYHQLFNPPASNSKN 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo220g00004 384 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 42 381 IPR031066 -
Pumo220g00004 384 SMART finulus 231 280 IPR011598 GO:0046983
Pumo220g00004 384 MobiDBLite consensus disorder prediction 185 219 - -
Pumo220g00004 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 292 IPR036638 GO:0046983
Pumo220g00004 384 Pfam Helix-loop-helix DNA-binding domain 229 275 IPR011598 GO:0046983
Pumo220g00004 384 Gene3D - 220 286 IPR036638 GO:0046983
Pumo220g00004 384 MobiDBLite consensus disorder prediction 140 184 - -
Pumo220g00004 384 MobiDBLite consensus disorder prediction 135 240 - -
Pumo220g00004 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 274 IPR011598 GO:0046983
Pumo220g00004 384 Coils Coil 231 251 - -
Pumo220g00004 384 CDD bHLH_AtPIF_like 229 287 IPR047265 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo220g00004 1 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 41.346 3.91e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo220g00004 HLH 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo220g00004 - - gmx:100820284 576.63