Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo219g00004 ATGGATGATGTCAACTGGTCCCCATATGTGACACGCATAGGATCGGTACCGGATGATGTCCGGGATTATAGAAAGGTTGTTGTAGACCAGAGCGATCCCGAGGGCATGCATGACCATGAGCTGATGCAACAACTATTGCGCATAGCACAGGGCGGCTTAGGTGTTGGTGCAGCTCCCAAGGACGTAGTCAAAGGAGGAGGACCGAGGGCGGTGGCCGCAGAGGCGTGCGTGAATAGTAATTCCGATTTGCAACCCTCGCAGGGAAGAGGTTCTATGGCAAAACACGACATGTCATCATCATGTCCTAGAAAGTACGATGTTTTCATTAGCTTCAGAGGTGAGGACATCCACGCCAGCTTCATTAGCCATCTGCGTTCTGCTCTCTCCCGATACAACATCAAATCATATGCGGACGACACAGATCTTGCAAAAGGAGACGAGATCTGGTCATCACTGTGCCAAGCAATCCATGATTCACAGCTTGCCATCGTGGTTTTCTCCAAAAACTACGCTGATTCAAAGTGGTGCTTGAATGAGCTGGTGGAAATACTGCAATGCAGAAAAACTCAGGGAATGGTAGTGATACCCGTGTTCTACGAAGTGGATCCATCGCACATAAGGAAGTACAGTGGCACTTATGGGGCAGCAAATGTAGAACACAAAGACAACGAATCCATCCAAAAGTGGAAAGCTGCACTCACTGAAGCCGCCAATATATCTGGATGGGACTCTCGTAGCCGTGACTACAAGAATGAATCTCAAGTAATAGAGAAAATTGTGGAAGATGTATCCGAGAAGTTGAGCCTGAGGTCCCCTGTTGAACTAAAAGTACAAGACCTTGTTCAAATTGAAAAAAATTGTGAAGAAGTCAAAATTTTGCTGTCAAATAACCAAAAATACCAGTTACAAAAAAATGTTCAAGTTATTGGAATTTGGGGTATGGGCGGGATTGGCAAGACAACTATTGCCAAAGCCTTGTTTTCTCAACTCTTTCCGCAATATGATGCTGTCTGCTTCTTAGCAAATCTTCTTTCTGAGCTACTCAAGGATGAACATCATAAACATAATCCTGCAGGATCCACATTCATTTTGAGGAGGCTAAGCAATAAAAAAGTGTTGATTGTACTTGATGATGTGGATAGTTTAGATCAATTAGATGAGTTGTGTGGACTATGTAACTATGCAGGTCCAGATAGTAAACTTACTATAACAACAAGAAATAGGCATTTGCTTAGAGGGAGAGTTGATGAGATATATGAGGTCAAGACATGGAACTTTGCCAAATCTCTAGAGCTTTTCAGTTTACATGCCTTCAAAGAAAGACTTCCTAAAGAGGGATATGAGGATCTCTCAAGAAGGGCGGTGACCTATGTAGGGGGAGTTCCTTTAGCTTTAAATGTTTTGGGTTCTAATCTTTATTGCAGAAGTGAAGATTTTTGGGACAGTGAATTGAGCAAACTCATGAACTGTCCGAATGACAGTATTCAAAATGTGTTACAAGTGAGCTATGATGGATTAGACAAACTAGAGAAGAAAATATTTCTAGACATTGCATTCTTTTTCAAAGGTGAACCAAGAGATGATGTCATAAGAATACTAGACGCATGTGGTTTCTACGCTACCAGTGGAGTAAAGGTCCTTGAAGATAAAGCTCTTATAACTAATTCATATTCTGGGAAGATACAAATGCATGACTTGATACAAGAAATGGGTTTGAATATAGTTCGTGAAGGCAGTGAAAATCCTGAAAAAGGTAGTCGATTGAAAGATTTAGAAGAAGTTTCTAATGTACTTGAAAATAAAAAGGGGAGTAATGTAATTGAAGGGATAAAATTAGATTTGTCTTCGATTGAGGATTTACATTTGAATGCTGACTCATTCAACATGATGACTAATTTAAGAATTCTTAGATTATACATCCCTTCGGGTAAGAGATCAGGAAATGTGCACCACTCTGGCGTCCTTAGTAAATTGTCTGTAAATTTTTGTGCTAAGATGCTTGTTGAGATTTGCATGCCGCAGAGCCATCTTACAAAACTTTGGCAGGGGGTGCAGGATGTTGCAAATTTAGTGCGAATTGACCTAAGTGAATGCAAGCACTTGAAGAATCTCCCTGATTTGTCTAAGGCCTCCAAACTTAAATGGGTGAATCTTTATGGTTGTAAAAGTTTGTGTGAAATTCACCCATCTATGTTCTCTTTTGACACACTTGAAATTTTGATACTGGATGGCTGCAAAAAGCTCAAGAGTCTTAAAAGTAAGAAACACTTAACATCTCTGAAGAAGATCAGTGTCAATGGCTGCACCAGTCTGAGGGAATTCTCAGTGTCATCAGATTCAATCACATGCTTGGATTTAAGCACCACAAGAATTGAAATGTTGGACTCTTCAATTGGGCGTCTAAGAAATCTCAAGTCACTCAATGTACACGGTTTGAGACGTGGTAATCTTCCAAATGAGTTATCTTTACTAAAAGGTCTTGAGGAGCTTAAGATTTGTAATTGTAGAGTAGCTATTGACAAACAGAAACTGCATGAGATATTTGATGGCTTGAAATCTCTACGACTACTACACTTGAAGGATTGTTGTAACTTGTGTGAGCTCCCTGACAACATTAGTGGCTTATCGAACCTATATGAGCTAAGACTAGATGGTAGCTGTGTGAAGACATTACCTGCTAGCATCAAAAATCTCTTTAATCTGGGAACTCTGTCCTTAGAGAATTGTAGGAAGCTTGAGAGTCTACCAACGCTTCCACCATTGGTCACAGTGCTTAATGTCGGGAACTGCAGTTCACTGAGGACAGTATCCACTTTAACAACTTTTGCATTGATAGTATGGAAGAGCAAATTCATTTCATTCATGAATTGTGTTGGACTGGATGATCCTTCACTCCACTTGATTATGGAGAATGCTCACTTAGCAACAAAAAATACGGTGTGTCATGATATGATTTTGAAAGAAATAAATGAAGACAACACTTATAAATTTGTGAAGGTTTCTTTCCCAGGAAGCAGAGTCCCAAGGCAGTTCGAATATCGAACAACACACTCCTCAATCACTATTGATCTTCCTTCTTTTCAATCTAACTTTGTGGGAATAACTTTGTGTGTGGTTCTTTCGCCCTCCCGAGGAATGGAGAACCTTGGTGCTAAAATCTGGTGTCAGTGCTACTTGCCAAATGGTACGAGGTTGGGACCCGTGACCACATGGTATCATGAAGCAGTCACTGGGTTAATTTCTGATCATGTTTTTATGTGGTGGGACTCAAGCCACTTTGACAGCATCCTCAAATATTGGCCGAATGGTGAATGA 3315 0.4066 MDDVNWSPYVTRIGSVPDDVRDYRKVVVDQSDPEGMHDHELMQQLLRIAQGGLGVGAAPKDVVKGGGPRAVAAEACVNSNSDLQPSQGRGSMAKHDMSSSCPRKYDVFISFRGEDIHASFISHLRSALSRYNIKSYADDTDLAKGDEIWSSLCQAIHDSQLAIVVFSKNYADSKWCLNELVEILQCRKTQGMVVIPVFYEVDPSHIRKYSGTYGAANVEHKDNESIQKWKAALTEAANISGWDSRSRDYKNESQVIEKIVEDVSEKLSLRSPVELKVQDLVQIEKNCEEVKILLSNNQKYQLQKNVQVIGIWGMGGIGKTTIAKALFSQLFPQYDAVCFLANLLSELLKDEHHKHNPAGSTFILRRLSNKKVLIVLDDVDSLDQLDELCGLCNYAGPDSKLTITTRNRHLLRGRVDEIYEVKTWNFAKSLELFSLHAFKERLPKEGYEDLSRRAVTYVGGVPLALNVLGSNLYCRSEDFWDSELSKLMNCPNDSIQNVLQVSYDGLDKLEKKIFLDIAFFFKGEPRDDVIRILDACGFYATSGVKVLEDKALITNSYSGKIQMHDLIQEMGLNIVREGSENPEKGSRLKDLEEVSNVLENKKGSNVIEGIKLDLSSIEDLHLNADSFNMMTNLRILRLYIPSGKRSGNVHHSGVLSKLSVNFCAKMLVEICMPQSHLTKLWQGVQDVANLVRIDLSECKHLKNLPDLSKASKLKWVNLYGCKSLCEIHPSMFSFDTLEILILDGCKKLKSLKSKKHLTSLKKISVNGCTSLREFSVSSDSITCLDLSTTRIEMLDSSIGRLRNLKSLNVHGLRRGNLPNELSLLKGLEELKICNCRVAIDKQKLHEIFDGLKSLRLLHLKDCCNLCELPDNISGLSNLYELRLDGSCVKTLPASIKNLFNLGTLSLENCRKLESLPTLPPLVTVLNVGNCSSLRTVSTLTTFALIVWKSKFISFMNCVGLDDPSLHLIMENAHLATKNTVCHDMILKEINEDNTYKFVKVSFPGSRVPRQFEYRTTHSSITIDLPSFQSNFVGITLCVVLSPSRGMENLGAKIWCQCYLPNGTRLGPVTTWYHEAVTGLISDHVFMWWDSSHFDSILKYWPNGE 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo219g00004 1104 ProSiteProfiles TIR domain profile. 103 267 IPR000157 GO:0007165
Pumo219g00004 1104 PRINTS Disease resistance protein signature 366 380 - -
Pumo219g00004 1104 PRINTS Disease resistance protein signature 458 472 - -
Pumo219g00004 1104 PRINTS Disease resistance protein signature 685 701 - -
Pumo219g00004 1104 PRINTS Disease resistance protein signature 308 323 - -
Pumo219g00004 1104 Gene3D Ribonuclease Inhibitor 579 779 IPR032675 -
Pumo219g00004 1104 Gene3D Ribonuclease Inhibitor 780 948 IPR032675 -
Pumo219g00004 1104 Pfam Leucine Rich Repeat 667 685 IPR011713 -
Pumo219g00004 1104 Pfam NB-ARC domain 303 488 IPR002182 GO:0043531
Pumo219g00004 1104 SMART till_3 104 239 IPR000157 GO:0007165
Pumo219g00004 1104 Gene3D - 425 507 IPR042197 -
Pumo219g00004 1104 SUPERFAMILY Toll/Interleukin receptor TIR domain 98 242 IPR035897 -
Pumo219g00004 1104 Gene3D - 269 418 IPR027417 -
Pumo219g00004 1104 FunFam Disease resistance protein (TIR-NBS-LRR class) 101 269 - -
Pumo219g00004 1104 SUPERFAMILY L domain-like 562 961 - -
Pumo219g00004 1104 Pfam TIR domain 104 281 IPR000157 GO:0007165
Pumo219g00004 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 517 IPR027417 -
Pumo219g00004 1104 Gene3D - 102 268 IPR035897 -
Pumo219g00004 1104 Pfam C-JID domain 1002 1086 IPR045344 -
Pumo219g00004 1104 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 105 776 IPR044974 GO:0006952
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo219g00004 100 918 WRKY Transcription Factor Family AT4G12020 30.518 3.41e-86 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo219g00004 - - ccaj:109795381 1451.8