Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo214g00012 ATGGGTGCCGTCGTCGAGTGTTACCCGCCGCAGCGTGCGGCGGTGCTGTCCCTGAACACCTTGCCTTTAGGGTTCCGTTTCCGTCCCACCGATGAGGAGCTTATAGATTACTACCTGCGCTCGAAGATCAACGGAAATGGTGATGATGTCTGGGTTATCCGTGAAATTGATGTCTGCAAATGGGAGCCTTGGGATTTGCCTGATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGACCGGAAGTATCCGAACGGGCACAGGTTGAACCGAGCTACGAATCATGGCTATTGGAAGGCGACAGGGAAGGATCGAAGGATTAAGTCTGGCTCCACCTTGATTGGAATGAAGAAGACTCTTGTTTTCTATACTGGCCGTGCTCCCAAGGGGAAGAGGACTTATTGGGTTATGCATGAGTACAGGCCTACCCTGAAGGAGCTTGATGGAACCAATCCTGGACAGAATCCATATGTCCTTTGTCGATTATTTAAGAAACAAGATGAGAGTCTTGAAGTTTCAAACGGTGATGATGTGGAGCGGACTGCTTCAACTCCTATGACTGCCAATTACTCTCCCGACGAAATACAATCTGATTCAGCTCTGGTTCCAGCATCTTCCTCACAGATTACTGAAGATGATAAGGCTCTAGCAGTTATTGCTGAGAACTCTGAGGAAGCAATATCCAACATTATAACCCCTGTTGATTGCCATAGTGACGGATGTTATGCTCCTGATGCACCAAATCAAATTGTAGAACCAGCTGCAGAGGAGGATCAGCCATTTAACGTGGAGATATTTTATGATCCAACAAATCAGCAATTAGACGACAAATTATTCTCCCCTGTCCATGCGCATTTCCCAGCAGATTTTTATTATCAAGCTAACAATCAATCAGAACTTCAGTATGGTACAAATGAGAATATATCAGAATATTTTGACTCAGTTGTTAATTGGGATGCGTTCTCTTATGATACCAGCAGTCTAGACCTGAGCTCATCCTTCCTTAATCCTAAGGACAATGGATCAGGCAGTGACTCAGATGTGGATATGGCCAATATGCCGCATATGCAAGCATTGCATGATTATCCTAAGGAGGCAGTTGAGCAGAAGAGCAATGTAGGATTATTTCAGAACAATCCCCAGATGCCTTTCTCAAATGATGGTACGATGGGCCAAGTGCACAATGGGGTCAACTATTTTGAGCAACCAAGAAACTTTGATGCATTTGTTAGTGGTGATACTGGAATCAGAATAAGGCCTCGTCAAGGACGAAATGAACAGCCAAACATGAACACAATGGTACAATCACAAGGTATTGCACCAAGGAGAATACGATTGGGAGTTGTTAGACGTCCACTTGGTTCCCAGGAGACGGCAAAAGATGGGAGTTGTGCTTGTAGCCCCAGAAGACCATAA 1434 0.454 MGAVVECYPPQRAAVLSLNTLPLGFRFRPTDEELIDYYLRSKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRRIKSGSTLIGMKKTLVFYTGRAPKGKRTYWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKQDESLEVSNGDDVERTASTPMTANYSPDEIQSDSALVPASSSQITEDDKALAVIAENSEEAISNIITPVDCHSDGCYAPDAPNQIVEPAAEEDQPFNVEIFYDPTNQQLDDKLFSPVHAHFPADFYYQANNQSELQYGTNENISEYFDSVVNWDAFSYDTSSLDLSSSFLNPKDNGSGSDSDVDMANMPHMQALHDYPKEAVEQKSNVGLFQNNPQMPFSNDGTMGQVHNGVNYFEQPRNFDAFVSGDTGIRIRPRQGRNEQPNMNTMVQSQGIAPRRIRLGVVRRPLGSQETAKDGSCACSPRRP 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo214g00012 477 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 268 - -
Pumo214g00012 477 FunFam Nac domain-containing protein 86 30 174 - -
Pumo214g00012 477 MobiDBLite consensus disorder prediction 177 199 - -
Pumo214g00012 477 Pfam No apical meristem (NAM) protein 22 147 IPR003441 GO:0003677|GO:0006355
Pumo214g00012 477 ProSiteProfiles NAC domain profile. 21 171 IPR003441 GO:0003677|GO:0006355
Pumo214g00012 477 SUPERFAMILY NAC domain 12 171 IPR036093 GO:0003677|GO:0006355
Pumo214g00012 477 MobiDBLite consensus disorder prediction 182 199 - -
Pumo214g00012 477 Gene3D NAC domain 30 175 IPR036093 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo214g00012 14 452 NAC Transcription Factor Family AT4G35580 43.736 6.00e-97 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo214g00012 NAM 1.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo214g00012 - - gmx:100778903 885.945