Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo20g00014 ATGGCAAAAACGAGGTTAGGCAGAAAATATTTGGATTCCTATACCATTACTGGCAGCAACGAGATCGTAAGAGTTGGGGACTATGTACTAGTGCACCCCTCAGATACCAATGACGAACCTTACGTGGCACGCGTGGAGAAGATCAAACATGATAGTAGGAACATCATTAATGTGTGTGTGAGGTGGTATTATAGGCCTGAAGAAACTATTGATGGACGCTTGGCTTTCCACAGAACTATGGAGCTGTTTCTTTCTGACCATTATGATGTTCAAAGTGTTGACACCATTGATGGGAAGTGTTTTGTGCACTCTTTTAGGGACTATGTCAAGCTTGAGAATGTTGGTACTCAGGATTACTATTCTAGGTTTGAGTACAATGTTGCTAATAAGATTGTCAAGCCTGACAAAATTGCTGTGTATTGTGAGTGTTCTATGCCATATAACTCGGATGACCTCATGGTGCAGTGTGAGACTTGCAAGAATTGGTTCCATCCTCATTGCTTGGGCATTAATGATGAACAAGCAAAGGAGTTGGAAAATTTTTTATGTTCAAAGTGTAAATAA 564 0.4043 MAKTRLGRKYLDSYTITGSNEIVRVGDYVLVHPSDTNDEPYVARVEKIKHDSRNIINVCVRWYYRPEETIDGRLAFHRTMELFLSDHYDVQSVDTIDGKCFVHSFRDYVKLENVGTQDYYSRFEYNVANKIVKPDKIAVYCECSMPYNSDDLMVQCETCKNWFHPHCLGINDEQAKELENFLCSKCK 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo20g00014 187 ProSiteProfiles Zinc finger PHD-type profile. 138 187 IPR019787 -
Pumo20g00014 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 187 IPR013083 -
Pumo20g00014 187 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Pumo20g00014 187 SMART PHD_3 140 187 IPR001965 -
Pumo20g00014 187 PANTHER OS08G0421900 PROTEIN 1 187 - -
Pumo20g00014 187 SUPERFAMILY FYVE/PHD zinc finger 135 187 IPR011011 -
Pumo20g00014 187 Pfam BAH domain 22 135 IPR001025 GO:0003682
Pumo20g00014 187 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Pumo20g00014 187 Pfam PHD-finger 140 187 IPR019787 -
Pumo20g00014 187 Gene3D - 1 129 IPR043151 -
Pumo20g00014 187 SMART BAH_4 21 136 IPR001025 GO:0003682
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo20g00014 41 127 Core DNA Replication Machinery Family AT4G14700 29.545 1.12e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo20g00014 BAH 8.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo20g00014 K25868 - gmx:100810424 274.248