Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo20g00011 ATGGAGAGCAATGGTGCTTCATCTACCTTTGATTCTGGACTCCGAAGACGCAGTGCAGTGTGTCAGTGTAACTTGGATGCTCCGTTGTCCACTTCGTGGACAGAGGCTAATCCTGGTAGAAGGTTTTTCGGGTGTGGGCTATACCGAGTTGAAGGGAGAAAGGGATGTGGATTTTTTGATTGGGTTGATTGTCCGTTGACTGCTCATGAGAAGAAAATAGTTATTGGCCTGATGAGGAAGGGAATCAAGAGTGTTCCAAGGAGGATTAGGGTAAGAATTGCTCGCAAGAGGAATGACGATGAAGATGCCAAGGAAGAGCTATACTCTCTTGTAACGGTTGTTGAGATCCCTAAGGAAGAGCTCAAAGGGTTGGGCACCAAGGTTATTGATGACAAGGATTGA 402 0.4627 MESNGASSTFDSGLRRRSAVCQCNLDAPLSTSWTEANPGRRFFGCGLYRVEGRKGCGFFDWVDCPLTAHEKKIVIGLMRKGIKSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKGLGTKVIDDKD 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo20g00011 133 PANTHER ZINC ION-BINDING PROTEIN 9 106 - -
Pumo20g00011 133 Pfam GRF zinc finger 20 63 IPR010666 GO:0008270
Pumo20g00011 133 Gene3D - 68 133 IPR023621 -
Pumo20g00011 133 SUPERFAMILY Ribosomal protein L31e 77 105 IPR023621 -
Pumo20g00011 133 Pfam Ribosomal protein L31e 78 105 IPR000054 GO:0003735|GO:0005840|GO:0006412
Pumo20g00011 133 ProSiteProfiles Zinc finger GRF-type profile. 21 65 IPR010666 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo20g00011 80 133 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 74.074 4.77e-22 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo20g00011 K02910 - gmx:100305583 97.4413