Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo20g00009 ATGCTAATAGCTTGTAAGTACGAGGAGGTCTCAGTCCCTACCGTTGAGGATTTTATTCTGATAACAGACAAGGCGTATACAAGAAATGAAGTTTTAGATGTGAGCGAGAATACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGGCAATCTTGGAGGAATATGTGCATGGAAATTGTTAAGAGCCCAGAGTTCTGTGGCAAACTTACATTCCCTGTGTCCTTGAAACAGCCTGGGCCATGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCTCTGTTGAAAATGGAAAATTCCTCCTTTCTGCTATGAGGACAAGGAGAACAAGTTACATTGAGTACGTTATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAACACTTTCATTGGAAAGCTCAGAGTGTTTGCTGAGGAACTGGATGATTTGAAAAAAATGCTTCAGAAAGAGACTCATCTAAGAAAAGCTGCTGAAGGGGAAGTAAATAATCTGAAGATTCAAGTGGCTGAACTAAAAAAGTCTGAGGCATTAGGAAAGTCAGAGATCTTAAAACTTCATAACATGTTGGAAGATAAGGAACGTCAAAAAGAGAAACTTGAAGGAGAAATAGCAATATTACAAAGTCAATTGTTGCAGTTAAGTCTTAAAGCTGATGAGGATCCATCAAAGTCCCGTGCTGTTGTTGGCTGTTATATAAGTGAAAATTATAATGGAGCTGCCTTGCATCTCATTGATTTTATAGATATCACTACAAGGCCACTGATACCATTGTATCCTGCCTCTATCTTTCGAAGTGAAAATATTGGTGAAGGAATGAATGTAGTTTTGTACTTATATGAAAATTACTCTAAAGACCTTCCAGACCAATTTCGGGAAAATATCAGTGTAAGAGGGATTTTTACTGTCATTGTGCCATATGTTATAGACGATGCCTCTGTTATAGTGTGTCTATAG 1005 0.3791 MLIACKYEEVSVPTVEDFILITDKAYTRNEVLDVSENTWPARKHVVACAAVWQSWRNMCMEIVKSPEFCGKLTFPVSLKQPGPWDGIIQCFIKRDKSNLTYHLFLCLSSVENGKFLLSAMRTRRTSYIEYVISMDADNISRSSNTFIGKLRVFAEELDDLKKMLQKETHLRKAAEGEVNNLKIQVAELKKSEALGKSEILKLHNMLEDKERQKEKLEGEIAILQSQLLQLSLKADEDPSKSRAVVGCYISENYNGAALHLIDFIDITTRPLIPLYPASIFRSENIGEGMNVVLYLYENYSKDLPDQFRENISVRGIFTVIVPYVIDDASVIVCL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo20g00009 334 PANTHER TUBBY-RELATED 28 161 - -
Pumo20g00009 334 SUPERFAMILY Tubby C-terminal domain-like 66 151 IPR025659 -
Pumo20g00009 334 Coils Coil 157 191 - -
Pumo20g00009 334 Coils Coil 199 233 - -
Pumo20g00009 334 Gene3D Tubby Protein; Chain A 74 214 IPR025659 -
Pumo20g00009 334 SUPERFAMILY Cyclin-like 1 33 IPR036915 -
Pumo20g00009 334 Pfam Tub family 78 151 IPR000007 -
Pumo20g00009 334 Pfam Cyclin, N-terminal domain 1 34 IPR006671 -
Pumo20g00009 334 Gene3D - 1 35 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo20g00009 32 151 TUB Transcription Factor Family AT1G43640 76.423 1.20e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo20g00009 Tub 2.8e-24 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo20g00009 K19600 - gmx:100799279 220.705