Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo209g00006 ATGTCGTCGTCTTCATCCTCCCCCACCCACTGGATCTACGATGTGTTCATCAGCTTCAGAGGAGAGGACACGCGTAAGACTTTCGTTGCTGATCTCTATGCTGCCCTCTCAAATGCAGGAATCTTGACTTTCATCGATGACGAGCTTCCCAGGGGGATGGGGATAAAACCAGAACTAGTGCGAGCCATAGAAGGAAGATACGGCCAGTTGGTTCTGCCCGTATTTTACAAAGTTGATCCATCGTCTGTACGTCATCAAACGGGTGCTTTTGGAGAGCACTTGAAAGCACATGAAGTGACGTCCGATATGTTCATAAATTGGAGGAATGCACTCATAAAGGCTGCAAATCTTTCTGGTTGGTATTCAAACAATTACAGGACTGAACGTGAGCTAGTGGAGGACATTGTTGAGGAAATTTTGGAAAGACTGGACAAGGACTTATTGTCTATTACCGAATTCCCAGTTGGATTAAAATCCCGTGCGCAACAAGTGATTAAGTTTATTAAATATAAACCATATGGCAAAGGTTGTGTTATAGGGATCTTGGGGATGGGGGGATTGGGTAAAACAACCCTGGCCAAAGTCATCTACAATCAGAATCGTCGGAGATTCAGGCATAGATGTTTCATTGAAAATATTAGAGAAGTTGATGTAAAAAATAGTAAAGAGTGTATTGATTTGCAAGAGAAACTTGTTTCTGGTCTTGGAATTAATACAAGGGAGAAGATACATAGCAGTGCGATGGGAACAGCTATGATCGAGAAAAGCCTTGTTGGAAGAAGGGCTCTCATTGTACTTGATGACGTGACTGACTTTGAGCAATTAAAAGTCCTATGTGGAAATATTAAAAGCCTTCTTCGAAAAAGTGTAATCATCATCACAACCCGAGATGAACGCCCGCTTAAAGTCCTTAAAGCTAATCGTCATAAGTCCCGTAAGCTTTTAAGGTGGCATGCCTTTAAAGAAGAAAGTCCAACAGAAGATTTGATTGAACTCTCAGAGAAGGTTGCTGCTTACTGTGGAGGAGTGCCACTGGCTCTTGAAGTCCTTGGATCTTTCTTATTACCTGAGAGGAGGAAAGAACAATGGGAAAGTGTATTGTCAAAACTGAAGAAAATTCCCAATCACAAAGTGCAAGAGAAACTGAAAATAAGTTATGATGCTTTATATTCTGACGAAAAGGAGATATTCCTTGACGGCAGAACAGATGTTATAGAGATATTAAAAGGCTGTGACCTTGATCCAGAGATTGGATTAACAACACTGGTTGAAAGGAGCCTCATAAAGCTAAAAAAGAATAACAAGCTCAACATGCATGATTTGATACGTGATATGGGGAGAGAAATTGTTCGTCAAGAGTCTAAAAAGGAGCCTGAGAAGCGGAGTCGATTGTGGTTTCACCAAGAAGTATTTGATGTTTTGTCAGAAAAAACCGGAACAAAAGCAATTGAGGGCTTGACTTTAAAGTCGCAAACAAATAGTCGACTTCAATTCAATACGGAAGCTTTTAAGAAAATGAAGAAATTGAGACTTTTGCAACTTGATCATGTACAACTTGATGGAGATAATTATGGGTATCTTAACAAAAACCTAAGATGGGTTTGTTGGCAAGGATTTCCTTTAAAACACATACCAGGCAACTTATATCAGGGAAATGTAATTTCTATTGAACTAAAACATAGTAATATTAGACAAGTATGGAAGGAGCCCCAGTTGCTGGAGAGGCTAAAGATCCTCAATCTTAGCCATTCAAGGAACTTGATACACACCCCTGATTTTTCAAAACTACCAAATCTTGCAAAGCTCATTCTCAAAGATTGTACAAGCTTGTCTGAGGTGCACCAATCCATTGGAGATCTAACTAATCTTCTTATGATAAATTTGATGGATTGTACAAGCCTTAGCAATCTTCCAAGGACGATCTATAAGTTGAAATCTGTGAAAACTATCATCCTTTCTGGTTGTTCAAGGATTGACAAGTTGGAAGAAGATATAGAACAGATGGAATCCTTGACTACATTGATTGCAAAAGATACAGCTGTAAAAGATATGCCTCATTCAATAGTAAGATTAAAAAGCATTGGATATATATCCATCTGTGGACATGAAGGATTAGCACGTGATGTTTTTCCTTCTCTCATATGGTCTTGGATGTCTCCAACAGCAAATCTTGTTGGGAGCATGTCAACTTCTCAAATCTCCATGAATATACGGGACAAAAATTGTGGTGACCTATTGCCAATGCTACATGGACATTCAAAACGTCGATGTATTTTAGTGCAGTTAAAGTCAAAGTTTCAACTAACCCAAGAATTAAGAAGAATTATGGATGCCTTATGTTATATAAAATTTACTGAATTGGAAGGAACATCATATACATCACAAATTTCAGAAAGTTCCACGGAATCTTATTTGATTGGAATGGGAAGCTACGACCAAGGCTTGAGAACCAACGATTCTAGTGGTTTTTCCCTTCCGGGTGACAATTATCCTTATTGGCTAGCTTATATAGGTCAGGGACACTCAGTTCATTGTCAATTGCCTGAGGATAGTGATTGTTGCATGAAGGGAATGGCTTTGTGTGTTGTTTATTCATCAACCTGTAAAGACATGGTAGTTGAATGTCTTACTGGTGTTTTGATTGCTAATTACACAAAGTGCACCATCCAAATATACAAGCGAGACACAATAACTTCCTTCAATGATGAAGATTGGCAGGGCATAATATCAAATCTGAGACCTAGTGACAATGTGGAGATTTTTGTAGCTCTTGGGCATGGATTGACAGTTCTGCAGACAGCTATCTATCTAATATATGATCAGTCAATTGATGTGAAAAAGGAGCTATCACTTAAAGTGAACATGCAGCCATCATCTAATGTGAGAAAACGGATGCATCACCAAATGTGA 2910 0.3897 MSSSSSSPTHWIYDVFISFRGEDTRKTFVADLYAALSNAGILTFIDDELPRGMGIKPELVRAIEGRYGQLVLPVFYKVDPSSVRHQTGAFGEHLKAHEVTSDMFINWRNALIKAANLSGWYSNNYRTERELVEDIVEEILERLDKDLLSITEFPVGLKSRAQQVIKFIKYKPYGKGCVIGILGMGGLGKTTLAKVIYNQNRRRFRHRCFIENIREVDVKNSKECIDLQEKLVSGLGINTREKIHSSAMGTAMIEKSLVGRRALIVLDDVTDFEQLKVLCGNIKSLLRKSVIIITTRDERPLKVLKANRHKSRKLLRWHAFKEESPTEDLIELSEKVAAYCGGVPLALEVLGSFLLPERRKEQWESVLSKLKKIPNHKVQEKLKISYDALYSDEKEIFLDGRTDVIEILKGCDLDPEIGLTTLVERSLIKLKKNNKLNMHDLIRDMGREIVRQESKKEPEKRSRLWFHQEVFDVLSEKTGTKAIEGLTLKSQTNSRLQFNTEAFKKMKKLRLLQLDHVQLDGDNYGYLNKNLRWVCWQGFPLKHIPGNLYQGNVISIELKHSNIRQVWKEPQLLERLKILNLSHSRNLIHTPDFSKLPNLAKLILKDCTSLSEVHQSIGDLTNLLMINLMDCTSLSNLPRTIYKLKSVKTIILSGCSRIDKLEEDIEQMESLTTLIAKDTAVKDMPHSIVRLKSIGYISICGHEGLARDVFPSLIWSWMSPTANLVGSMSTSQISMNIRDKNCGDLLPMLHGHSKRRCILVQLKSKFQLTQELRRIMDALCYIKFTELEGTSYTSQISESSTESYLIGMGSYDQGLRTNDSSGFSLPGDNYPYWLAYIGQGHSVHCQLPEDSDCCMKGMALCVVYSSTCKDMVVECLTGVLIANYTKCTIQIYKRDTITSFNDEDWQGIISNLRPSDNVEIFVALGHGLTVLQTAIYLIYDQSIDVKKELSLKVNMQPSSNVRKRMHHQM 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo209g00006 969 Pfam TIR domain 13 64 IPR000157 GO:0007165
Pumo209g00006 969 Pfam TIR domain 68 147 IPR000157 GO:0007165
Pumo209g00006 969 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 120 IPR035897 -
Pumo209g00006 969 ProSiteProfiles TIR domain profile. 11 143 IPR000157 GO:0007165
Pumo209g00006 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 399 IPR027417 -
Pumo209g00006 969 Gene3D Ribonuclease Inhibitor 474 749 IPR032675 -
Pumo209g00006 969 Gene3D - 148 308 IPR027417 -
Pumo209g00006 969 PRINTS Disease resistance protein signature 178 193 - -
Pumo209g00006 969 PRINTS Disease resistance protein signature 256 270 - -
Pumo209g00006 969 PRINTS Disease resistance protein signature 571 587 - -
Pumo209g00006 969 PRINTS Disease resistance protein signature 340 354 - -
Pumo209g00006 969 SMART till_3 12 117 IPR000157 GO:0007165
Pumo209g00006 969 Gene3D - 10 65 IPR035897 -
Pumo209g00006 969 Pfam NB-ARC domain 163 389 IPR002182 GO:0043531
Pumo209g00006 969 SUPERFAMILY L domain-like 438 712 - -
Pumo209g00006 969 Gene3D - 66 147 IPR035897 -
Pumo209g00006 969 Gene3D - 309 390 IPR042197 -
Pumo209g00006 969 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 705 IPR044974 GO:0006952
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo209g00006 155 659 WRKY Transcription Factor Family AT5G45050 29.891 3.95e-57 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo209g00006 - - gmx:100809413 1225.31