Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo207g00003 ATGCTTCTAAAAGCCCCTCTCTGTTATCTCAACCTAAACCTCCCAAACACCCCATCCATGGCGGGAGCCACAGGAAGAACCCTCTTCACCCTCTCCTTCTCTTCCTCCTCTTCCCTCACGCGCCTCTCTCGCTTCACAAAGCGCGTCCCACTCCCCCAACCCCTCCCCCTCTTCCCCCGCTGCCTCCGCCCCCTCTGCTCCGTCGCCGTCGCCGCCGCCGTGCCGGAAACCGCCGACGCGAAGCACTCGCTTCTCCTGGAGAGGCTCCGGTCCCGACACCTCCGGGACGCCGTGAGAGCCGCCCCCGAACCAAGGAAGAAGGCGAAGGACGCCGCCGCCGCCGAGGCCGAGAAAGAGAGAGCGAAGGAGAAGAAGAATGTGGTTGCGAGTTTCGAGGAGCTGGGAGTGAGTGAGGAGGTCATGGGGGCGGTTAGGGAAATGGGAATTGAAGTACCTACTGAGATACAGGGTATTGGCATCCCCGCCGTTTTGGAAGAGAAGAGCGTCGTTTTGGGGTCGCATACTGGCTCTGGCAAAACCCTCGCTTACTTGCTTCCACTTGTTCAGTTGTTAAGACGGGACGAACAATTGAATGGAATACTGTTGAAGCCCAGGCGTCCACGAGCTGTTGTGTTGTGTCCTACGAGGGAATTATCTGAGCAGGTTTTTCGAGTTGCGAAATCGATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGTCCGGCTTAGGCCTCAGGAGGATTCACTTAATAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGGTTCTTCAACATATTGAGGAGGGAAATATGGTGTATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGGGGCTTTGGTCCTGATATACGCAAATTTCTGGGTCCATTAAAAAATCGCGCTTCAAAACCTGATGGCCAAGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAAAGCTGATTGATGAGGAGTTTCAAGGCATTGTTCATCTGCGCACGTCAACATTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTATTAAACTTTCAGGTTCTGAGAACAAGCTTGAAGCATTACTTCAGGTACTAGAGCCAAGCCTAGCAAAAGGGAACAAGGTGATGGTTTTCTGCAATACATTGGATTCAAGTCGTGCTGTGGATCATTTTCTTGGTGAAAATCAGATTTCTACTGTGAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTTAAGAGTGATGGTGATGATTGTCCTACATTGGTTTGCACAGACTTGGCTGCTAGGGGTCTAGACATGGATGTAGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCTATTGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAAAAAGGACTTGGACTTGGCCAGCAAAATAGAGGAAGCATTAAGGAAGAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTCCGAAGGGACATTGCAAGAACCCAAAATCAAATCACTGAGAAGGGAAAGAGCAAAAAATTGGTTAGAGTTTCAAAAGTTAAGGGCAAATCTGGTAGTCGTGCCAGTTCTGGGAATAATGGGTCAGGTATGAAATCTGGTAAAGGGTCACAAGTCAAATCTATGAAGAAAGGGATTAACGTTTCAAAATCTGAAAAAGCTTCTGGCTTGAGAAAAGCTTCTTCAGCGAAGAGGCAAACAAGTAAAATGGTCAGTGCCACCAAATCTACGAATTCTAAACTCAATGTTGTGGGGTTTAGGGGAAAAAATTCATCATCAAATAATAAAGAATCGGTTTTGTGA 1902 0.4763 MLLKAPLCYLNLNLPNTPSMAGATGRTLFTLSFSSSSSLTRLSRFTKRVPLPQPLPLFPRCLRPLCSVAVAAAVPETADAKHSLLLERLRSRHLRDAVRAAPEPRKKAKDAAAAEAEKERAKEKKNVVASFEELGVSEEVMGAVREMGIEVPTEIQGIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGVRLRPQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRASKPDGQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCTDLAARGLDMDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLDLASKIEEALRKNESLEAITKESVRRDIARTQNQITEKGKSKKLVRVSKVKGKSGSRASSGNNGSGMKSGKGSQVKSMKKGINVSKSEKASGLRKASSAKRQTSKMVSATKSTNSKLNVVGFRGKNSSSNNKESVL 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo207g00003 633 Coils Coil 106 134 - -
Pumo207g00003 633 SMART ultradead3 148 367 IPR014001 -
Pumo207g00003 633 SMART helicmild6 401 483 IPR001650 -
Pumo207g00003 633 CDD SF2_C_DEAD 360 492 - -
Pumo207g00003 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 503 IPR027417 -
Pumo207g00003 633 MobiDBLite consensus disorder prediction 550 578 - -
Pumo207g00003 633 Gene3D - 353 616 IPR027417 -
Pumo207g00003 633 MobiDBLite consensus disorder prediction 98 119 - -
Pumo207g00003 633 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 347 IPR014001 -
Pumo207g00003 633 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 82 520 - -
Pumo207g00003 633 MobiDBLite consensus disorder prediction 587 633 - -
Pumo207g00003 633 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 129 157 IPR014014 GO:0003724
Pumo207g00003 633 Pfam Helicase conserved C-terminal domain 372 483 IPR001650 -
Pumo207g00003 633 CDD DEADc 140 339 - -
Pumo207g00003 633 Gene3D - 95 348 IPR027417 -
Pumo207g00003 633 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 525 IPR001650 -
Pumo207g00003 633 MobiDBLite consensus disorder prediction 527 633 - -
Pumo207g00003 633 Pfam DEAD/DEAH box helicase 153 336 IPR011545 GO:0003676|GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo207g00003 128 505 Eukaryotic Initiation Factors Gene Family AT3G19760 27.532 5.21e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo207g00003 - - gmx:100805709 960.674