Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02204 ATGGGAGCAAGATCTAGTGAGGTGCTGCAAGGAGATTTCATAATGGAAGTCAAAAGGGGGATGTTGTCGGTTACAGGGTTTGCCTTCCAAATAGTGTGTTATAGTGAATTTGTCCTAGACCTCTTTTTTCATCTCCATCTCCTTTTCCCTTTCTTACTTTTCCAAGCCCCAAGCAGCCTCCGATTCGTGCCACTCTCCTCAAAAATGGCTGTTACCTTCTCAAATCTCCACACAGAATCAGGCCTCAAGTCCCTCGACGACTTCCTCTCTGGAAAGACCTATGTTTCTGGGGATCAGTTCACAAAGGACGATATCAAAGTGTATGCTGCTGTTTTGGAGAAGCCAGGTGGCTCTTTTCCCAATGCTGGCAAGTGGTTCGAGGTTGTCGCATCTCACCTTGCTGCAAGCTTCCCTGGCAATGCTCAAGGGGTGAGATTCAGTGGCAAAGCTGCTCCAGCTGAGGCTGCTCCTGCAAAACCGGATGCTTCTGCTGCTGAAGATGATGATGACCTTGATCTCTTTGGCGATGAGACAGAGGAAGACAAAAAGGCAGCAGAGGAAAGGGAGGCTGCTAAGAAGTCTGCCAAGAAGAAAGAGAGTGGCAAATCTTCTGTTCTGCTCGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGTCTGTTCGCAGTGTTGAGATGCCTGGTCTACTGTGGGGAGCATCCAAACTGGTTCCTGTTGGTTATGGGATCAAGAAGTTGCAGATCATGTTAACCATTGTCGATGATCTTGTATCTGTGGACAGCCTTATTGAGGAGCAACTGACAGTTGAGCCCATCAACGAGTATGTCCAAAGCTGTGACATTGTTGCATTCAACAAAATCTAA 876 0.4726 MGARSSEVLQGDFIMEVKRGMLSVTGFAFQIVCYSEFVLDLFFHLHLLFPFLLFQAPSSLRFVPLSSKMAVTFSNLHTESGLKSLDDFLSGKTYVSGDQFTKDDIKVYAAVLEKPGGSFPNAGKWFEVVASHLAASFPGNAQGVRFSGKAAPAEAAPAKPDASAAEDDDDLDLFGDETEEDKKAAEEREAAKKSAKKKESGKSSVLLDVKPWDDETDMKKLEESVRSVEMPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEQLTVEPINEYVQSCDIVAFNKI 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02204 291 SMART EF1_GNE_2 202 291 IPR014038 GO:0003746|GO:0006414
Pumo1g02204 291 Gene3D - 195 291 IPR014717 -
Pumo1g02204 291 SUPERFAMILY GST C-terminal domain-like 76 134 IPR036282 -
Pumo1g02204 291 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 76 291 - -
Pumo1g02204 291 MobiDBLite consensus disorder prediction 148 174 - -
Pumo1g02204 291 Pfam EF-1 guanine nucleotide exchange domain 204 291 IPR014038 GO:0003746|GO:0006414
Pumo1g02204 291 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 280 291 IPR001326 GO:0003746|GO:0005853|GO:0006414
Pumo1g02204 291 SUPERFAMILY eEF-1beta-like 199 291 IPR036219 -
Pumo1g02204 291 FunFam Elongation factor 1-beta 1 like 196 291 - -
Pumo1g02204 291 CDD EF1B 205 291 IPR014038 GO:0003746|GO:0006414
Pumo1g02204 291 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 167 175 IPR001326 GO:0003746|GO:0005853|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02204 Pumo-Chr1 51508396 51516218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02204 69 291 Eukaryotic Initiation Factors Gene Family AT5G12110 72.807 4.08e-105 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02204 K03232 - gmx:100306132 329.331