Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02202 ATGAGTAAGCTTCAGAGTGATGCTCTAAGAGAAGCTATCTCAGGAATCATGACTGATTCCAAGGAAAAGAACAGGAAATTTGTGGAGACCATTGAACTCCAAATTGGGTTGAAAAACTATGATCCCCAGAAGGACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCTCGTCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACACGTTGAGGAGGCTGAGAAGATAGGATTGGACTACATGGATGTTGAGGCCTTGAAGAAGCTTAACAAAAACAAGAACTTGGTGAAAAAACTAGCCAAAAAATATCATGCCTTTTTGGCCTCTGAAGCAGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGGGAAATTTCCTACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAACGAGACCAAGGCGATGGTCAAATTCCAGCTTAAGAAGGTGCTCTGCATGGGAGTTGCCGTGGGGAATGTTAGCATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGCGTGAACTTTCTTCTCTCTTTGTTGAAAAAGAATTGGCAGAACGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGATATCGTACCGTGTATTTTGA 651 0.4378 MSKLQSDALREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKNLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLLSLLKKNWQNVRCLYLKSTMGISYRVF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02202 216 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 11 211 - -
Pumo1g02202 216 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Pumo1g02202 216 Gene3D - 21 210 - -
Pumo1g02202 216 FunFam Ribosomal protein 65 154 - -
Pumo1g02202 216 Gene3D - 65 154 IPR016095 -
Pumo1g02202 216 FunFam Ribosomal protein 137 214 - -
Pumo1g02202 216 Pfam Ribosomal protein L1p/L10e family 22 211 IPR028364 -
Pumo1g02202 216 CDD Ribosomal_L1 9 215 IPR028364 -
Pumo1g02202 216 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 216 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Pumo1g02202 216 FunFam Ribosomal protein L10a 1 119 - -
Pumo1g02202 216 SUPERFAMILY Ribosomal protein L1 3 216 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02202 Pumo-Chr1 51387114 51388021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02202 1 216 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 87.963 4.53e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02202 K02865 - gmx:100305550 400.593