Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02200 ATGAGTAGTGTGACAAGTGGGGGTGATACTCGGAAAATATCCAAAGGTCGTCGGTCATCATCATTAGATGAAGAATCTGGAGTTGGAGGTAACATGGGAGGAGAAGGTCCTCTGAAGAAAGGCCCATGGACTGCAGCAGAGGATCAAATTTTGGTAGAATATGTCAAAAAGCACGGACAAGGCAATTGGAATGCAGTACAAAAGCATTCAGGACTTGCCCGATGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTGAGACCAGATCTAAAAAAAGGTTCATTTACTGCAGAGGAAGAGAACCGAATCCTTGAACTCCATGCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGACGTACGGATAATGAGATCAAGAACTACTGGAACACAAGAATCAAAAGAATGCAACGAGCAGGCTTACCAATCTACCCTGAAGAATTGTGCCAACGGATACTTAATGGCAATCAAGAAAGTCAAAATGTTGGCACCTTGACAAATGAAGCCTCCCAGCATGATGATCTCTCACAAACAGACAATTTTGATATACCAGACGTGGAATTGAAAAATTTCAAATTCCGTCATGGTCTATCACATGAACCGTCGATTTTTGATATGCCTGAAAGCAGCTTGTTTGATCAAAGTTCAGACTCATCCCATAGTTACAACTTCCTATTCCCAACTATACGTCCTTCGAAACGCCCTCGGGAGTCAGAAATGCTATACAATAGTTTTGGCAGCAGTTGTACAATTAATGCTGTCCCACTATTTGATCACTATGACAATTATACTTGTGAGAAAATTTCTGACTATCCTAGGTTGTCTCCCCCATGTGATCCTGTTCTTAACACCAGTGATCAGTTTCATGGCGAGAACCTTACCGGCAGCCATGCCGCATTAAATGGCAATGCCTCTTCTTCTGTGCCCATATTCGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATCCTGAAACTCAACATGGTAGCTGGGGCACGCCTACATCCCCACTTCCTTCACTCGAGTCTGTTGATACATTGATTCAGTCTCCTCCGGTTGAGCCTATTCTTTCAGATCCCATTTCTCCACAGAGCAGTGGTTTGCTTGAAGCGATAGTCTACAACTCGAAGAGCTTGCAAGGCTCAAACAATGATTTATTATTGCAAGAGTCAACTGGTACAGCCAATGAAGTAGCTAAGAGTTCAACCTTGAATCATCCCTTCAAGACAGAATGGGATGAACAAGGGGAGCCAAATTCCCCCTTAGGTCAATCTGCTGCTTCAGTTCTGACTGACCATACTCCTGTAAGCATGTGCTCAGTGGATGGGCCCCAATCAATTGAAGCCACTCAGGTTCATGATGATAAGCATGAAGCACTCACCGAGTTCCCAGACAGTTCCAGGAAGAAAAAGAAATTAAAACAGATGGATTATACACGGCCAGATGCTTTACTTGACTTGGGTTGGTTTGGAAATAGCACTGAGTATGAAAGTGATCAATCTGTTCTAAAAGATGCTTTAAGTGCACTTCTCGGTGAAGATTGTCAGGGTCAGCAGTAG 1575 0.44 MSSVTSGGDTRKISKGRRSSSLDEESGVGGNMGGEGPLKKGPWTAAEDQILVEYVKKHGQGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGSFTAEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPEELCQRILNGNQESQNVGTLTNEASQHDDLSQTDNFDIPDVELKNFKFRHGLSHEPSIFDMPESSLFDQSSDSSHSYNFLFPTIRPSKRPRESEMLYNSFGSSCTINAVPLFDHYDNYTCEKISDYPRLSPPCDPVLNTSDQFHGENLTGSHAALNGNASSSVPIFGAMKLELPSLQYPETQHGSWGTPTSPLPSLESVDTLIQSPPVEPILSDPISPQSSGLLEAIVYNSKSLQGSNNDLLLQESTGTANEVAKSSTLNHPFKTEWDEQGEPNSPLGQSAASVLTDHTPVSMCSVDGPQSIEATQVHDDKHEALTEFPDSSRKKKKLKQMDYTRPDALLDLGWFGNSTEYESDQSVLKDALSALLGEDCQGQQ 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02200 524 Gene3D - 39 92 - -
Pumo1g02200 524 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 23 513 - -
Pumo1g02200 524 MobiDBLite consensus disorder prediction 1 42 - -
Pumo1g02200 524 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
Pumo1g02200 524 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Pumo1g02200 524 FunFam Transcription factor MYB97 95 170 - -
Pumo1g02200 524 CDD SANT 95 136 IPR001005 -
Pumo1g02200 524 Pfam Myb-like DNA-binding domain 43 103 - -
Pumo1g02200 524 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Pumo1g02200 524 Gene3D - 95 177 - -
Pumo1g02200 524 CDD SANT 42 87 IPR001005 -
Pumo1g02200 524 SMART sant 39 89 IPR001005 -
Pumo1g02200 524 SMART sant 92 140 IPR001005 -
Pumo1g02200 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Pumo1g02200 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 87 IPR017930 -
Pumo1g02200 524 FunFam MYB-related transcription factor 39 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02200 Pumo-Chr1 51323004 51330026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02200 38 519 MYB Transcription Factor Family AT5G06100 40.486 1.11e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo1g02200 Myb_DNA-bind_6 6.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02200 K09422 - gmx:100800658 927.546