Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02199 ATGGTTGAACCTGTCCCTGATAACTGTGATGTGATTAAGGCAATGGTTGAATTCGCTCGTCGCCACCAAGTTAACATCACAGTGTTAAGTGCGTCGGGCACCATTTCCAACGTCACTCTTAACCATGCTGATTCTCATGCTTCCGCTTTCACTCTTTATGGACCATTCCAATTAATTTCCCTCACTGGCACCTGCATAAATAATACTACTTCCTCTAGTTCTTCATCTTTATCATCATCATTTAACCTTGACCCTTGTTGTTTTAGGATTTCCTTTTGTACAACTTCAGGTCAAAGCGTTATTGGGGTTGTTAGAGGAAAGGTTGTGGCAGCTAATGGGGTTATTGTGGTGGTTGCTATTGTCAATAACCCTATGGTTCACAAGGACGGGATCAATAACAATAGTAAATAA 411 0.4112 MVEPVPDNCDVIKAMVEFARRHQVNITVLSASGTISNVTLNHADSHASAFTLYGPFQLISLTGTCINNTTSSSSSSLSSSFNLDPCCFRISFCTTSGQSVIGVVRGKVVAANGVIVVVAIVNNPMVHKDGINNNSK 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02199 136 CDD DUF296 5 110 IPR005175 -
Pumo1g02199 136 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 128 IPR014476 GO:0003680
Pumo1g02199 136 Pfam Plants and Prokaryotes Conserved (PCC) domain 5 121 IPR005175 -
Pumo1g02199 136 SUPERFAMILY AF0104/ALDC/Ptd012-like 5 127 - -
Pumo1g02199 136 Gene3D - 3 134 - -
Pumo1g02199 136 ProSiteProfiles PPC domain profile profile. 1 136 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02199 Pumo-Chr1 51133310 51133957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02199 5 136 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.582 1.16e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02199 - - gmx:100790942 157.147