Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02198 ATGGTTAAGGTTTGGAAGTCATGGTGTGTTTTGGTTTCTGTTCTGCATTTGTTCCACATCACATCTTCGGATTTCATTGTCAAGAATCTACCAGGTTTTGGGGATCTTCCTTTCACATTGAATACTGGATATATTGGTGTTGGAGAAAGAGAAGAGGTGCAGTTATATTATTACTTTATTGAATCTCAAAGGAGCCCCTTGAATGACCCCCTTCTACTTTGGCTTGTTGGAGGTGCAGGTTGCTCTGCTCATTCTGCTTTCTTCTATGAAAACGGGCCATTAATGTTTAATTATGACGATTTTAATGGGAGTTTTCCACAGCTTCTATTGAATCAGAATACTTGGACAAAGGTACTCAACATATTATATGTGGATGCACCTGTTGGTACGGGATATTCTTACTCAAAAACACAAGAAGGCTATTATAGCAATGACAAGCAATTGGTGGAACACATATATGATTTTTTCCATAAGTGGCTGGGGGATCACCCTGAATTCAGATCGAATCCACTTTACATTGGTGGTGGTTCTTATTCAGGCATAGCTGTTCTTCCCCTTGTTCAGAAAGTATATGAAGATTGTAAAGCAGGACGCTCACCAATCCTGAACTTCCAAGGCTTTGTGCTTGCAAGTCCAAGACTTGACTCTTTCATGGACAATAACACAAAAGTTGAATTTGCTCACCAACGGACACTTATATCAAATGAATTATACGAGTCAATTAAATCTAATTGCAATGGTGATTATGTTAATCTTGATCCTAACAACACAAAATGCATGTCAGATTATGAAGCCTACTCTGAGTTAGTTCGTTACATAAATGAATATCAAATTTTGGAACCAAGTTGTATGATTGGATCTAAGGAGAATCAAAGAATACTTTCTCAAGAGTTCAAAAATATCCGCCAATTAAACTTTAGGTGTCGGGATGACAAATATGCGCTTGGAGAATTATGGGCAAATGATCCACATGTTCGAAAGGCTCTTCATGTTAGAGAGGGAACAAAAGATCACTTCCAACGATGCAATCACAGCTCTGCATATACACGGAACGTTATTCCTAGTGTCGTTGAATACCTTCATAATCTTACAAACACAAACCTGCGTTCTATAATTTACTGCACGGATCTTGACATGGCAATACCGTATCTTAGTTCACTTTCAATTGTCAAGTCACTTAATTTGAAATTGGATATGATTTGGCACCCATGGTTCGTTGATGGTGAAGTGGCAGGATATGCCGAGGAATACAAAAAAAGTGAGTATCGCCTAACGTACGCCATTGTGAAGGTAGGAGAAGAAGGAAATGAAGCAAAAGAGGAAGTGCAAAAGGGAGGACGTCATGTGGCACAAGAGGACAAGCCTAGGGAGGTATATGAGATGGTTGATAGATGGTTGTCATTTTCTGATATATAA 1416 0.3877 MVKVWKSWCVLVSVLHLFHITSSDFIVKNLPGFGDLPFTLNTGYIGVGEREEVQLYYYFIESQRSPLNDPLLLWLVGGAGCSAHSAFFYENGPLMFNYDDFNGSFPQLLLNQNTWTKVLNILYVDAPVGTGYSYSKTQEGYYSNDKQLVEHIYDFFHKWLGDHPEFRSNPLYIGGGSYSGIAVLPLVQKVYEDCKAGRSPILNFQGFVLASPRLDSFMDNNTKVEFAHQRTLISNELYESIKSNCNGDYVNLDPNNTKCMSDYEAYSELVRYINEYQILEPSCMIGSKENQRILSQEFKNIRQLNFRCRDDKYALGELWANDPHVRKALHVREGTKDHFQRCNHSSAYTRNVIPSVVEYLHNLTNTNLRSIIYCTDLDMAIPYLSSLSIVKSLNLKLDMIWHPWFVDGEVAGYAEEYKKSEYRLTYAIVKVGEEGNEAKEEVQKGGRHVAQEDKPREVYEMVDRWLSFSDI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02198 471 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 27 454 IPR001563 GO:0004185|GO:0006508
Pumo1g02198 471 Gene3D - 306 470 - -
Pumo1g02198 471 Gene3D alpha/beta hydrolase 23 285 IPR029058 -
Pumo1g02198 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Pumo1g02198 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 184 IPR001563 GO:0004185|GO:0006508
Pumo1g02198 471 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Pumo1g02198 471 Pfam Serine carboxypeptidase 35 467 IPR001563 GO:0004185|GO:0006508
Pumo1g02198 471 FunFam Serine carboxypeptidase-like 19 20 289 - -
Pumo1g02198 471 SUPERFAMILY alpha/beta-Hydrolases 27 467 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02198 Pumo-Chr1 51038660 51047941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02198 304 467 Calmodulin-binding Proteins AT2G22960 33.537 1.96e-24 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02198 K16296 - gmx:100791997 771.926