Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02187 ATGAAGAAGCTTTCTCTTCATGCTTGTTTACTCAATTTGAGTCTCTTGGTTCTTCTTCCGTACAGCAAAGCTAGTCAGGCTGATAAACTTCAAGAGTTGATTCTGTCTAAGAGCTCACAGCAGAAGCCTCCTGTGACCCTTTCTTGGGCAGAGGAAGATGCAGTGAAAACTCACTCTTCTGCTTATGTTGCACCTCAAGAGGGGCAAAAGCTAGCTGACAAGATTGTGGCATTGCCTGGCCAGCCCTATGGGGTGAATTTTGACCAATATTCAGGCTATGTCACTGTTGATCCAAATGCTGGAAGAGCACTTTTCTATTATTTTGTGGAGTCTCCATATAACCCTTCAACTAAACCTTTAGTATTGTGGCTAAATGGAGGACCTGGTTGTTCCTCATTGGGGTATGGTGCCTTTGAGGAATTGGGACCTTTCAGAATAAACTCTGATGGCAAAACACTCTATAGCAACAAATATGCTTGGAATGAAGTGGCAAATGTGCTGTTCTTGGAATCCCCTGCTGGAGTGGGCTTTTCCTACTCAAACACTACTTCTGACTATGATCATTCAGGAGATAAGTCTACTGCTAAAGATGCCTATGTTTTCCTCATCAATTGGCTAGAGAGGTTTCCAGAGTACAAAACCCGCGATTTTTACATAACTGGAGAGAGCTATGCTGGGCATTATGTGCCTCAGCTTGCATACACTATTTTGGTGAACAATAAATTCAGTCAACAAAGCATTAACCTCAAAGGCATTGCTATAGGGAATGCTTGGATTGATGATGTTACAAGTTTAAAGGGGATATATGATTACATTTGGACTCATGCTTTGAGCTCGGATCAAACACATGAGTTGATTGAGAAGTACTGCGATTTCACTTCTGAAAGAGTTTCGGCAATATGTAGCAATGCAACTAGAACGGCCTTTGAGGAGAATGGAGACATAGACCCTTATAACATCTATGCACCACTGTGTCACGACTCTTCTCTCAAAAATGGATCAACTGGTTCTGTATATGATTTTGACCCGTGTTCTGATTACTACGGGGAAGCCTATCTAAATAGGCCAGAGGTCCAACTAGCTCTTCATGCAAAACCCACAAACTGGACCCACTGCAGTAATTTAATAGACTGGAACGACAGCCCAGCTACCATCCTACCCATCATCAAGTATCTCATCGACAATGATGCTTTCTTCTACAGTGGAGATACTGATTCAGTGGTACCAGTCACATCTTCCAGATATTCAATCAACACCCTCAACCTCCCTATCCAGGCTCCTTGGCGTCCATGGTATTCTGGAAATGAGGTTGGAGGATATGTGGTGAAATACAACGGAGTGACATTTGTTACAGTAAGAGGAGCAGGACATCTGGTTCCAAGCTGGCAACCAGCACGGGCTCTGACTTTGATCTACTCATTCCTCTATGGAAGCCTGCCTCCTGCTTCACCATGGAAGGGTTACTAA 1467 0.4342 MKKLSLHACLLNLSLLVLLPYSKASQADKLQELILSKSSQQKPPVTLSWAEEDAVKTHSSAYVAPQEGQKLADKIVALPGQPYGVNFDQYSGYVTVDPNAGRALFYYFVESPYNPSTKPLVLWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYSNKYAWNEVANVLFLESPAGVGFSYSNTTSDYDHSGDKSTAKDAYVFLINWLERFPEYKTRDFYITGESYAGHYVPQLAYTILVNNKFSQQSINLKGIAIGNAWIDDVTSLKGIYDYIWTHALSSDQTHELIEKYCDFTSERVSAICSNATRTAFEENGDIDPYNIYAPLCHDSSLKNGSTGSVYDFDPCSDYYGEAYLNRPEVQLALHAKPTNWTHCSNLIDWNDSPATILPIIKYLIDNDAFFYSGDTDSVVPVTSSRYSINTLNLPIQAPWRPWYSGNEVGGYVVKYNGVTFVTVRGAGHLVPSWQPARALTLIYSFLYGSLPPASPWKGY 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02187 488 SUPERFAMILY alpha/beta-Hydrolases 76 477 IPR029058 -
Pumo1g02187 488 ProSitePatterns Serine carboxypeptidases, histidine active site. 447 464 IPR033124 GO:0004185
Pumo1g02187 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 205 230 IPR001563 GO:0004185|GO:0006508
Pumo1g02187 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 156 168 IPR001563 GO:0004185|GO:0006508
Pumo1g02187 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 179 IPR001563 GO:0004185|GO:0006508
Pumo1g02187 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 447 460 IPR001563 GO:0004185|GO:0006508
Pumo1g02187 488 Gene3D - 385 477 - -
Pumo1g02187 488 Gene3D - 344 377 - -
Pumo1g02187 488 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 75 464 IPR001563 GO:0004185|GO:0006508
Pumo1g02187 488 ProSitePatterns Serine carboxypeptidases, serine active site. 219 226 IPR018202 GO:0004185
Pumo1g02187 488 FunFam Carboxypeptidase 385 477 - -
Pumo1g02187 488 Gene3D alpha/beta hydrolase 70 327 IPR029058 -
Pumo1g02187 488 FunFam Carboxypeptidase 69 327 - -
Pumo1g02187 488 Pfam Serine carboxypeptidase 79 475 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02187 Pumo-Chr1 50481945 50485227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02187 341 478 Calmodulin-binding Proteins AT2G22960 30.201 7.93e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02187 K16297 - gmx:100790394 912.138