Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02186 ATGAAGAAGCTTTCTCTTTATGCTTGTTTACTCAATTTGAGTCTCTTGGTTCTTCTTCCCTACAGCAAAGCCAGTCAGGCTGATAAACTTCGAGAGTTGATTCTGTCTAAGAGCTCACAGCAGAAGCCTCCAGTGACCCTTTCATGGGCAGAGGAAGATGCAGTGAAAACTCACTCTTCTGCTTATGTTGCACCTCAAGAGGGGCAAAAGGAAGCTGACAAGATTGTGGCATTGCCTGGCCAGCCCTATGGGGTGAATTTTGACCAATATTCAGGCTATGTCACTGTTGATCCAAATGCTGGAAGAGCACTTTTCTATTATTTTGTGGAGTCTCCATATAACCCTTCAACTAAACCTTTAGTTTTGTGGCTAAATGGAGGACCTGGTTGTTCCTCATTGGGGTATGGTGCCTTTGAGGAGTTGGGACCTTTCAGAATAAACTCTGATGGCAAAACACTATATCGCAACAAATATGCTTGGAATGAAGTGGCAAATGTGCTGTTCTTGGAATCCCCTGCTGGTGTGGGCTTTTCCTACTCAAACACTACTTCTGACTATGATCATTCAGGAGATAAGTCTACTGCTAAAGATGCCTATGTTTTCCTCATCAATTGGCTAGAGAGGTTTCCAGAGTACAAAACCCGCGATTTTTACATAACTGGAGAGAGCTATGCTGGCCATTATGTGCCTCAGCTTGCATACACTATTTTGGTGAACAATAAATTCAGTCAACAAAGCATTAACCTCAAAGGCATTGCTATAGGGAATGCTTGGATTGATGATGTTACAAGTTTAAAGGGGATATATGATTACATTTGGACTCATGCTTTGAGCTCGGATCAAACACATGAGTTGATTGAGAAGTACTGCGATTTCACTTCTGAAAGAGTTTCGGCAATATGTAGCAATGCAACTAGAACGGCCTTTGAGGAGAATGGAGACATAGACCCTTATAACATCTATGCACCACTGTGTCACGACTCTTCTCTCAAAAATGGATCAACTGGTTCTGTATATGATTTTGACCCGTGTTCTGATTACTACGGGGAAGCCTATCTAAATAGGCCAGAGGTCCAACTAGCTCTTCATGCAAAACCCACAAACTGGACCCACTGCAGTGGAGATACTGATTCAGTGGTACCAGTCACATCTTCCAGATATTCAATCAACACCCTCAACCTCCCTATCCAGGCTCCTTGGCGTCCATGGTATTCTGGAAATGAGGTTGGAGGATATGTGGTGAAATACAACGGAGTGACATTTGTTACAGTAAGAGGAGCAGGACATCTGGTTCCAAGCTGGCAACCAGCACGGGCTCTGACTTTGATCTACTCATTCCTCTATGGAAGCCTTCCTCCTGCTTCACCATGGAAGGGTTACTAA 1383 0.436 MKKLSLYACLLNLSLLVLLPYSKASQADKLRELILSKSSQQKPPVTLSWAEEDAVKTHSSAYVAPQEGQKEADKIVALPGQPYGVNFDQYSGYVTVDPNAGRALFYYFVESPYNPSTKPLVLWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYRNKYAWNEVANVLFLESPAGVGFSYSNTTSDYDHSGDKSTAKDAYVFLINWLERFPEYKTRDFYITGESYAGHYVPQLAYTILVNNKFSQQSINLKGIAIGNAWIDDVTSLKGIYDYIWTHALSSDQTHELIEKYCDFTSERVSAICSNATRTAFEENGDIDPYNIYAPLCHDSSLKNGSTGSVYDFDPCSDYYGEAYLNRPEVQLALHAKPTNWTHCSGDTDSVVPVTSSRYSINTLNLPIQAPWRPWYSGNEVGGYVVKYNGVTFVTVRGAGHLVPSWQPARALTLIYSFLYGSLPPASPWKGY 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02186 460 ProSitePatterns Serine carboxypeptidases, histidine active site. 419 436 IPR033124 GO:0004185
Pumo1g02186 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 76 436 IPR001563 GO:0004185|GO:0006508
Pumo1g02186 460 Gene3D - 344 374 - -
Pumo1g02186 460 FunFam Carboxypeptidase 358 449 - -
Pumo1g02186 460 Gene3D alpha/beta hydrolase 69 327 IPR029058 -
Pumo1g02186 460 SUPERFAMILY alpha/beta-Hydrolases 76 449 IPR029058 -
Pumo1g02186 460 ProSitePatterns Serine carboxypeptidases, serine active site. 219 226 IPR018202 GO:0004185
Pumo1g02186 460 FunFam Carboxypeptidase 69 327 - -
Pumo1g02186 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 419 432 IPR001563 GO:0004185|GO:0006508
Pumo1g02186 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 205 230 IPR001563 GO:0004185|GO:0006508
Pumo1g02186 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 179 IPR001563 GO:0004185|GO:0006508
Pumo1g02186 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 156 168 IPR001563 GO:0004185|GO:0006508
Pumo1g02186 460 Gene3D - 375 450 - -
Pumo1g02186 460 Pfam Serine carboxypeptidase 79 373 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02186 Pumo-Chr1 50447516 50450696 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02186 373 450 Calmodulin-binding Proteins AT2G22960 35.443 1.57e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02186 K16297 - gmx:100790394 861.677