Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02184 ATGAAGAACCTTTCTCTTTATGCTTGTTTACTCACTTTGAGTCTCTTGATTTTTCTTCCCCATATCAAAGCAAGTCAGGCTGATAAACTTGATGAGTTGATCCTATCTAGGAGCTCAAAGAAACCTCCTGTGACCCTTTCTTGGGCAGAGGAAGATGCATTGAAAATGCATTCTTCTGCTTATGTTGCACCTCAAGAGGGGCTAAGGCAAGCTGACAAGATTGTCACACTGCCTGGCCAGCCCCATGGGGTGAACTTTGACCAATATGCAGGCTATGTCACTGTTGATCAAAAGGCTGGAAGATCACTTTTCTATTATTTTGTTGAGTCTCCATATAACTCTTCAGCTAAACCTTTAGTATTGTGGCTCAATGGAGGTCCAGGTTGTTCCTCATTGGGGTATGGAGCATTTGAGGAGCTGGGACCCTTTAGAGTCAACTCTGATGGCAAAACACTGTTTCATAACAAATATGCTTGGAATGAAGTGGCAAATGTGTTGTTCTTGGAATCCCCTGCTGGAGTGGGCTTTTCCTACTCAAACACTACTTCTGACTATGATCATGCAGGAGATAAGTCTACTGCTAAAGATGCCTATGTTTTCCTCATCAATTGGCTAGAAAGGTTTCCAGAGTACAAAACCCGCGATTTTTACATAACTGGAGAGAGCTATGCTGGCCATTATGTGCCTCAGCTTGCATACACTATTTTGGTGAACAATAAATCCAGTCACCAAAATATTAACCTCAAAGGCATTGCTATAGGGAATGCTTGGATTGATGATGTTAATACTTTCAAGGGGAGATTTGATTACTTATGGACTCATGCTTTGAACTCAGATCAAACACATGCGATGATTAAGAAGTATTGCGACTTCACTTCTGAAAATATTTCAGCAGTATGTATTAATGCAACAATAAGTGCCATACTTGAGATAGGAATCATAGATTCCTCTAACATCTATGCTCCACTGTGTTATGACTCGTCTCTCAAAAATGGATCTACTGGCTCTGTATATGATTTTGACACATGTTCTTCCTACTATGTGGAAACCTATCTAAATAGGCCAGAGGTCCAAAAAGCTCTTCATGCAAAACCCACAAATTGGACCCATTGCAGTGATTTTGACTGGAAGGACAGCCCAACTACCATCCTACCCATCATTAAGTATCTCATTGCTAGCCACATTAAATTGTGGATATACAGTGGTGATACAGATGCAAGGGTCCCAGTCACATCTTCCAGATATTCAATCAACACCCTGAGGCTACCTATTCAGGTTGATTGGCATCCATGGTATTCTGGATTTGAGGTTGGAGGATACGTGGTGGGATACAAAGGAGTGAAATTTGTTACAGTAAGAGGAGCAGGACATTCTGTTCCAAGCTGGCAACCAGCACGGGCTCTGACCATGATCTCATCATTCCTCTCTTGA 1431 0.4172 MKNLSLYACLLTLSLLIFLPHIKASQADKLDELILSRSSKKPPVTLSWAEEDALKMHSSAYVAPQEGLRQADKIVTLPGQPHGVNFDQYAGYVTVDQKAGRSLFYYFVESPYNSSAKPLVLWLNGGPGCSSLGYGAFEELGPFRVNSDGKTLFHNKYAWNEVANVLFLESPAGVGFSYSNTTSDYDHAGDKSTAKDAYVFLINWLERFPEYKTRDFYITGESYAGHYVPQLAYTILVNNKSSHQNINLKGIAIGNAWIDDVNTFKGRFDYLWTHALNSDQTHAMIKKYCDFTSENISAVCINATISAILEIGIIDSSNIYAPLCYDSSLKNGSTGSVYDFDTCSSYYVETYLNRPEVQKALHAKPTNWTHCSDFDWKDSPTTILPIIKYLIASHIKLWIYSGDTDARVPVTSSRYSINTLRLPIQVDWHPWYSGFEVGGYVVGYKGVKFVTVRGAGHSVPSWQPARALTMISSFLS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02184 476 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 74 464 IPR001563 GO:0004185|GO:0006508
Pumo1g02184 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Pumo1g02184 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 447 460 IPR001563 GO:0004185|GO:0006508
Pumo1g02184 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Pumo1g02184 476 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Pumo1g02184 476 ProSitePatterns Serine carboxypeptidases, histidine active site. 447 464 IPR033124 GO:0004185
Pumo1g02184 476 Gene3D - 343 374 - -
Pumo1g02184 476 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Pumo1g02184 476 FunFam Carboxypeptidase 68 326 - -
Pumo1g02184 476 Pfam Serine carboxypeptidase 78 475 IPR001563 GO:0004185|GO:0006508
Pumo1g02184 476 Gene3D - 383 476 - -
Pumo1g02184 476 Gene3D alpha/beta hydrolase 69 326 IPR029058 -
Pumo1g02184 476 FunFam Carboxypeptidase 383 476 - -
Pumo1g02184 476 SUPERFAMILY alpha/beta-Hydrolases 74 476 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02184 Pumo-Chr1 50315175 50367314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g02184 338 476 Calmodulin-binding Proteins AT2G22960 25.694 3.57e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02184 K16297 - gmx:100778342 887.1