Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g02159 ATGGATGTTCAAGTGATAAACGTGGAAGGAAGTGGTCATCAAACTAAGGCAGATGATGGGGATGCAGAACCAAGTGACGGTGAAGTTAATAATGCTGAAAACTATGGATCTCATGTTGAGGATGAGATTTCTGAGCCACACGTGGGTATGGAATTTGACTCTGAAGATGTTGCTAAGAATTTTTATAATGAATATGCCAGACACATGGGTTTTAGCTCTAAAGTTGGCCCATATGGTCGCTCTAAAGCTGATGGGGAAAATATGTATAGGGAGTTTGTGTGTGATCGGGAAGGTTTGAAAAAAAGGCCAAATGAAAGTTGCAATGCAATGATTAGGATTGAGCTAAAGGGTCAAAATAAATGGGTTGTAACAAAATTTGTGAAGGAGCATAGTCATTCCATGGTGAGTTCCAGTAAGGCACACAATAGTCGGCCAAGTAAGCATTTTTCCAGTGTTGGAAGGACAATGCCTGAAACATATCAAGGAGTGGGTCTTGTTCCCAGTGGTGTCATGTATGTATCTATGGATGGGAATCGTGTTTCGAACCAGAATACTCGTGGGGTGAAGAATATTCATACTGCTGCTGCTGCTGAACGCAGTCACCCAGTTAAAAATTCCACATTGATGAATTATACTGTTAGGCCTTCCTTTCAAAACAAAACATTGGGGAGGGATGCTCATAATCTGCTGGAGTATTTTAAGAAGATGCAGGCTGAGAATCCTGGTTTCTTCTATGCTATACAACTTGATGAAGACAATCGTATGTCTAATGTCTTTTGGGCAGATGCAAGATCAAGGACAGCATACAGTTATTACGGTGATACAGTTCATCTGGACACAACCTACAAGGTAAATCAATATAGAGTGCCATTTGCTCCTTTTACTGGGGTAAATCATCATGGTCAAATGGTTTTGTTTGGTTGTGCACTCATTTTGGATGATTCTGAGGCATCTTTTTTGTGGCTCTTGAAGACATTTCTGACAGCAATGAATGATCGTCAGCCTGTCTCTATAACTACCGATCAAGACAGAGCCATGCAGACAGCAGTTTCTCAAGTTTTCCCACAAGCTCGCCATTGTATTAGCAAGTGGCATATCTTGAGAGAAGGCCAAGAAAAGTTGGCCCATGTATGTCTTGGGCATCCAAATTTTCAGGTTGAACTTTATAATTGTATTAACTTGACAGAAACCATTGAGGAGTTTGAGTCATCTTGGAATTTTGTGATCAATAAATATGAACTCAGAGGAAATGATTGGCTTCAGTCATTGTATAATGCTCGTGCTCAATGGGTTCCAGCATACTTCCGTGATTCGTTTTTTGCAGCAATATCTCCTACTCAAGGATTTGATGGTTCTTTTTTTGATGGTTATGTCAACCAACAGACGACGTTGCCATTGTTCTTCAGGCAGTATGAAAGAGCTTTAGAGAGCTGGATTGAAAAGGAAATAGAAGCAGATTTTGAGACAGTTAGCACGGCACCCATTTTGAAGACACCTTCACCAATGGAGAAACAGGCTGCTAATCTTTATACAAGAAAAATATTTTCAAAGTTTCAAGAAGAGCTTGTTGAAACTTTTGTTTATACTGCAAATAGAATTGAAGGAGATGGGCCAAATAGCACATTTAGAGTTGCAAAATTTGAGGATGACCAAAAGTCATACATGGTCACATTAAACCATTCTGAGTTGAAAACTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGGCATATTTTAACAGTTTTCACTGTGACAAATGTACTTACATTACCACCCCATTACATCTTAAAACGGTGGACAAGGAATGCAAAAAGCAGTGCTGGATTGGATGAACATACGGGTGAATCACATGCACAGGAGTCTTTGACAGCAAGGTATGGCAATCTTTGTAAGGAAGCCATCAGATACGCTGAGGAAGGGTCAGTAACTGTGGAAACTTATAATGCTGCAATAAGTGGTCTTAGAGAAGGTGTAAAGAAGGTCGCTAATGTGAAAAAAAGTGTTGCCAAAGTTATGCTTCCTAATAATCAGGCCAGTAGGACTGCATATGATGACAGGAAAACTACTCCAGCTTTGGATACAACTCCTCTTTTATGGCCTCGGCAAGATGAAATAACAAGGAGGTTTAATCTTAATGATGCTGGTGGTCCTGTTCAATCAGTTGCTGATCTAAACTTGCCACGGATGGCCCCAGTCTCTCTTCATCGAGATGATGGTCCATCTGAAAACATGGTAGTTCTTCCATGCCTAAAATCAATGACATGGGTAATGGAGAACAAGAACTTGACTCCAGGGAATAAAGTAGCTGTTATCAATCTGAAGTTGCAAGACTATAGCAGGGCTCCATCCACAGAATCTGAGGTTAAGTTTCATCTCTCCAGAGTTACTTTGGAACCAATGTTGAAGTCTATGGCTTACATCAGCGAACAGCTCTCAACGCCAGCTAATAAGGTTGCTGTAATAAATCTCAAGCTTCAAGATACCGAGACAACCTCTGGTGAGTCAGAAGTAAAATTTCAGGTGTCCAGGGATACATTGGGTGCTATGCTGCGATCAATGGCCTATATCCGTGAGCAGCTTTCTCATGCTGATGATGCACAGTCAGAACCTCTATCGAAAAAGCAAAGGAAGTAA 2646 0.4059 MDVQVINVEGSGHQTKADDGDAEPSDGEVNNAENYGSHVEDEISEPHVGMEFDSEDVAKNFYNEYARHMGFSSKVGPYGRSKADGENMYREFVCDREGLKKRPNESCNAMIRIELKGQNKWVVTKFVKEHSHSMVSSSKAHNSRPSKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRVSNQNTRGVKNIHTAAAAERSHPVKNSTLMNYTVRPSFQNKTLGRDAHNLLEYFKKMQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSYYGDTVHLDTTYKVNQYRVPFAPFTGVNHHGQMVLFGCALILDDSEASFLWLLKTFLTAMNDRQPVSITTDQDRAMQTAVSQVFPQARHCISKWHILREGQEKLAHVCLGHPNFQVELYNCINLTETIEEFESSWNFVINKYELRGNDWLQSLYNARAQWVPAYFRDSFFAAISPTQGFDGSFFDGYVNQQTTLPLFFRQYERALESWIEKEIEADFETVSTAPILKTPSPMEKQAANLYTRKIFSKFQEELVETFVYTANRIEGDGPNSTFRVAKFEDDQKSYMVTLNHSELKTNCSCQMFEYSGILCRHILTVFTVTNVLTLPPHYILKRWTRNAKSSAGLDEHTGESHAQESLTARYGNLCKEAIRYAEEGSVTVETYNAAISGLREGVKKVANVKKSVAKVMLPNNQASRTAYDDRKTTPALDTTPLLWPRQDEITRRFNLNDAGGPVQSVADLNLPRMAPVSLHRDDGPSENMVVLPCLKSMTWVMENKNLTPGNKVAVINLKLQDYSRAPSTESEVKFHLSRVTLEPMLKSMAYISEQLSTPANKVAVINLKLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSHADDAQSEPLSKKQRK 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g02159 881 MobiDBLite consensus disorder prediction 134 154 - -
Pumo1g02159 881 MobiDBLite consensus disorder prediction 1 33 - -
Pumo1g02159 881 ProSiteProfiles Zinc finger SWIM-type profile. 554 590 IPR007527 GO:0008270
Pumo1g02159 881 Pfam MULE transposase domain 276 368 IPR018289 -
Pumo1g02159 881 SMART 26again6 565 592 IPR006564 GO:0008270
Pumo1g02159 881 MobiDBLite consensus disorder prediction 136 154 - -
Pumo1g02159 881 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 37 667 IPR031052 GO:0006355
Pumo1g02159 881 Pfam SWIM zinc finger 560 588 IPR007527 GO:0008270
Pumo1g02159 881 Pfam FAR1 DNA-binding domain 60 135 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g02159 Pumo-Chr1 49387795 49395958 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pumo1g02159 MULE 1.7e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g02159 - - gmx:100786516 1692.55